CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 63/193 (32.64%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQETIKLAIRALL 653
            +YD  +TV+SP G L QVEYA+EA+++G+A VG++      +   K++   L   +  +K+  +D H  ++ AGL +D R+L    + EC S R   +  V ++ +   +    Q  TQ  G RPFG+  LI G+D       + QTDPS    +    + G  S S R +LE+N          +L + ALL
Sbjct:    5 QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ--KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYD--KDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALL 193          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.389e-21
Identity = 62/185 (33.51%), Postives = 91/185 (49.19%), Query Frame = 3
Query:   99 FSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK-NCKETSGQETIKLAIRAL 650
            FSPDG LFQ EYA +AV   +  +G++  D + L +EK  T KL   R   +I S+D HI +A  G   D + ++ RAR E  S R     P+    I   +    Q +T    VRPFG+ + +  +D  +  P LY  +P+G +  +   A G+     R  LEK N      ++ +K A R L
Sbjct:   14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYD--SEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARIL 196          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 58/206 (28.16%), Postives = 104/206 (50.49%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK-NCKETSGQETIKLAIRALLEV-VESGGKNIKV 689
            YD A + FSPDG +FQVEYA +AV      + +RG + + +  +K  + KL    +  ++ ++++++ +A AG   D   L N A  E         +P+ ++ I   +A     +T  G  RPFG     + ++  TG   L+  +PSG    +KA A G++  + +  +EK   +E    + +K A R ++ V  E+  KN+++
Sbjct:    8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LGISRPFGAGAFFMSWNKQTG-GRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQI 211          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 58/203 (28.57%), Postives = 95/203 (46.80%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPY----TGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET-----SGQETIKLAIRAL 650
            A +D+ ITVFSP+G L+QVEYA +AV   G   V +R  D + +  +     KL    ++  + +++++  +   G   D + L+ +AR E   ++     P+ V  + +    + Q  TQ  G+R  G     VG +        +P +Y  DP+G  +A  A A G+       FLEK  K       S +E   +A+ AL
Sbjct:    4 AGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGG-AAVHACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIALAAL 205          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   99 FSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIAL-GVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQS--HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE 608
            F+ +G L QVE+A++ V +    +G   +D + L GV K+ T     +  + KI  L + I     GL  DA  L   ARI+ Q    R  VE P+T   + +++   +Q +TQ  G RPFG+S L  G     G  +L  TDPSGT + WK    G N  ++   L+ +  E
Sbjct:   11 FTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEPT-----NGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTT--LCKFVGQRKQAFTQYAGTRPFGVSFLYAGV--IDGKYALMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPE 174          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA1_CAEEL2.143e-2232.64Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA3_SCHPO1.389e-2133.51Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA3_CAEEL5.112e-1628.16Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA1_TRYBB3.314e-1528.57Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA4_ENCCU5.652e-1533.53Probable proteasome subunit alpha type-4 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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