CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 107/211 (50.71%), Postives = 140/211 (66.35%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSN-SMREFLEKNCKETSGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + + L VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N +M  F EK   + S +E IKLAI AL + +E    +NI+VA++
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPSAENIEVAII 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.283e-47
Identity = 107/211 (50.71%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSN-SMREFLEKNCKETSGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D + L VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N +M  F +K   + +  E IKLAI AL + +E    +NI+VAV+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPSAENIEVAVI 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.128e-46
Identity = 105/211 (49.76%), Postives = 140/211 (66.35%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSN-SMREFLEKNCKETSGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + + L VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q +RLT  +P  V  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N +M  F EK   + + ++ IKLA+ AL + +E+    NI+VAV+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR---PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENPSADNIEVAVI 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.741e-46
Identity = 104/211 (49.29%), Postives = 142/211 (67.30%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSN-SMREFLEKNCKETSGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            A YDRAITVFSPDG LFQV+YA EAV++G  AVGV+  D + L VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N +M  F EK   E + +E IKLA+ AL +++E    ++I+VAV+
Sbjct:    8 AGYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEVAVI 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.056e-45
Identity = 100/210 (47.62%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEV--VESGGKNIKVAVM 698
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + + LGV+K+ T KL +  S+ K+  +D HI  A AGL ADARVL+ RARIE Q++R T  +P+ V+ + + I  L+Q YTQ GGVRPFG + LI G D  T    L++TDPSG  +  KA A G       +  E+  +E  + QE I+LA+RAL E    E+   N+++AV+
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVD--TKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREETTADNLEIAVV 217          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.168e-44
Identity = 96/198 (48.48%), Postives = 133/198 (67.17%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVES 668
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + + L  +K+   KL ++ ++ KI  +D HI  A +GL ADARVLI+RARIE Q +RLT ++P+TV+ + + I   +Q+YTQ GGVRPFG+S LI G D    VP LY+TDPSG    +KA A G   N++ EF EK  + + S  + + L + A+   +ES
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE---VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 97/199 (48.74%), Postives = 132/199 (66.33%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQ-ETIKLAIRALLEVVE 665
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D + L VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++ ++  G+ + IKLAI AL + +E
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 97/199 (48.74%), Postives = 132/199 (66.33%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQ-ETIKLAIRALLEVVE 665
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D + L VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++ ++  G+ + IKLAI AL + +E
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44
Identity = 98/210 (46.67%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   69 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVE-SGGKNIKVA 692
            MA YDRAIT+FSP+G ++QVEYA EAV++G   VGV+    + L  EK+    L DS S+ KI  +D H+A + +GL ADAR+LI+ AR    SHR   ++P+ VE++T+ +  L+Q+YTQ GG RPFG++ LI G D +     LYQTDPSG +  + A A G  S ++ EFLEKN K +    E I+LA++AL   VE +   N++VA
Sbjct:    6 MAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRHGA--RLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVA 213          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 89/201 (44.28%), Postives = 134/201 (66.67%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVESGGK 677
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++   ++ +  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP L+ T+PSG +  ++A A G+   +  EFLEKN KE  + +ETI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEK 208          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_PYRHO1.128e-4750.71Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_PYRAB3.283e-4750.71Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_PYRFU2.128e-4649.76Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_THESM4.741e-4649.29Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_METKA1.056e-4547.62Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_ARCFU1.168e-4448.48Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_THEK14.437e-4448.74Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO4.437e-4448.74Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_PYRAE7.569e-4446.67Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA_SULSO9.885e-4444.28Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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