CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.407e-43
Identity = 89/201 (44.28%), Postives = 134/201 (66.67%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVESGGK 677
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+  + + +  EKK   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR     HRL  ++P++++Y+T+ I+ ++Q YTQ GGVRPFG++ ++ G D   GV  L+ T+PSG F  ++A A G+   +  ++LEKN KE  S +ETI LA+ AL   ++ G K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVD--RGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTLKPGEK 208          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 96/209 (45.93%), Postives = 135/209 (64.59%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET-SGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D + L V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YT  GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE+   E  S  E ++LAI AL +  E    +NI +A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTEELKPENIDMAIV 216          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 95/209 (45.45%), Postives = 137/209 (65.55%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLE-KNCKETSGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D + L V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE K  ++ +  E ++LA+ AL +  E    +NI +A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEELKPENIDMAIV 216          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 96/209 (45.93%), Postives = 135/209 (64.59%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET-SGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D + L V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RARIE Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE    E  +  E ++LA+ AL +  E    +NI +A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAII 216          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 95/209 (45.45%), Postives = 135/209 (64.59%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET-SGQETIKLAIRALLEVVES-GGKNIKVAVM 698
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D + L V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE    E  +  E ++LA+ AL +  E    +NI +A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEELKPENIDMAIV 216          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 91/197 (46.19%), Postives = 128/197 (64.97%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQE-TIKLAIRALLEVVE 665
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D + L V+K+ T +L ++ S+ KI  +D HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E + +E    +  I L + AL +  E
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAE 201          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 95/209 (45.45%), Postives = 134/209 (64.11%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETS-GQETIKLAIRALLEVVES-GGKNIKVAVM 698
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D + L V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE    E     E ++LA+ AL +  E    +NI +A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEELKPENIDMAIV 216          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 90/197 (45.69%), Postives = 128/197 (64.97%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQE-TIKLAIRALLEVVE 665
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D + L V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D    +P L++TDPSG    +KA A G   N++ E  E   ++    +  I L + AL    E
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNLPRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42
Identity = 89/201 (44.28%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSG-QETIKLAIRALLEVVESGGK 677
            YDRAIT+FSPDG L+QV+YA EAV++G   +GV+    + L  EK+   +L D   + KI  LD+H+    AGL +D R+LI+ AR +   HRL  ++P+++EY+T+ I+ ++Q YTQ GGVRPFG++ ++ G D     P L  T+PSG F  + A A G+   +  E+LEKN KE    Q TI LA+RAL+  ++ G K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.424e-42
Identity = 92/197 (46.70%), Postives = 128/197 (64.97%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQE-TIKLAIRALLEVVE 665
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D + L V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E + KE    E  I L + AL +  E
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKR--PRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAE 201          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_METS56.407e-4344.28Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_METVS8.368e-4345.93Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METM58.368e-4345.45Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMP1.093e-4245.93Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM71.427e-4245.45Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METAC1.427e-4246.19Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METM61.864e-4245.45Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METBF1.864e-4245.69Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_SULAC2.435e-4244.28Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METTE5.424e-4246.70Proteasome subunit alpha OS=Methanosarcina thermop... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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