CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.516e-41
Identity = 87/201 (43.28%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVESGGK 677
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+    + L  EK+   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR +   HRL  ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ EKN +E  + Q+TI L IRAL   ++ G K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEK 209          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.516e-41
Identity = 90/197 (45.69%), Postives = 127/197 (64.47%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSG-QETIKLAIRALLEVVE 665
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D + L V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E + +E       I L + AL +  E
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.592e-41
Identity = 94/212 (44.34%), Postives = 138/212 (65.09%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGR-NSNSMREFLEKNCKETSGQETIKLAIRALLEVVE--SGGKNIKVAVM 698
            A YDRAITVFSPDG LFQVEYA EAV++G  ++GV+  + I L V+K+ T KL + +S+ KI  +D HI  A +GL ADAR +I +AR+E Q +R+T  +P+ VE + + I  ++Q YTQ GGVRPFG + LI+G     G   L++TDPSG    +KA A G     +M EF +K   + +  + I+LA+ A+ E  E  +  +++++AV+
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFG-TALIIGGVNGRGC-RLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKTTPESVEIAVI 216          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 91/192 (47.40%), Postives = 126/192 (65.62%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN-CKETSGQETIKLAIRAL 650
            YDR IT+FSPDG L+QVEYA EAV++G A+VG+R  D I L  +K+S   L +  SV KI   D+H+ +A AG  ADAR LI+ AR + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE+N  +E S  E + LA+R +
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTI 199          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 84/200 (42.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D + L  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++ ++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 84/200 (42.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D + L  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++ ++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 84/200 (42.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D + L  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++ ++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 84/200 (42.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D + L  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++ ++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.336e-40
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQE-TIKLAIRALLEVVESG 671
            YDR IT+FSPDG L+QVEYA EAV++G A+VGVR  D + +  ++ +   L +  S+ KI  +D+H+ +A AG  ADAR LI+ AR + Q +RL  ++P +VE +T+ I    Q+YTQ+GG RPFG++ L+ G +   G P L++TDPSGT   W+A A G +   ++ FLE+   E    E  I+LA+RAL  V E G
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDG 205          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 82/200 (41.00%), Postives = 130/200 (65.00%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D + L  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +  + ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WKA A G N+ + +  L+++ K + + ++ +KLA++AL + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTMDS 202          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_SULTO3.516e-4143.28Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_METMA3.516e-4145.69Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METTH4.592e-4144.34Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_HALWD5.997e-4147.40Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA4B_ORYSJ5.997e-4142.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI5.997e-4142.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ5.997e-4142.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI5.997e-4142.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSMA2_HALMA1.336e-4045.23Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA4_SPIOL2.976e-4041.00Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
back to top