CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 89/199 (44.72%), Postives = 127/199 (63.82%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVESG 671
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR  + + L  +K+S   L +  SV KI   D+HI +A AG  ADAR LI+ AR + Q +RL   +P+ +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G +    +E LE+N + + +  E I+LA+ A+    + G
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVE--NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDEG 206          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.077e-40
Identity = 90/199 (45.23%), Postives = 128/199 (64.32%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVESG 671
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++ ++ + L  +KK   KL +  S+ KI  +D+++A   +GL ADARVLI+ ARI  Q  ++T    V +E + + +A   Q+YTQ GGVRP+G+S +  G D     P L+  DP+GT + +KA A G   +++  FLEK  KE  S +E + L I+AL   +E G
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG--PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLEEG 204          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.077e-40
Identity = 89/195 (45.64%), Postives = 127/195 (65.13%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQET-IKLAIRALLEV 659
            YDR IT+FSPDG L+QVEYA EAV++G A++G+R  D + L V+K+    L +  SV KI   D+HI +A AG  ADAR LI+ AR + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   ++E+LE++  E+   E  I LA+ AL  V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASV 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.077e-40
Identity = 91/195 (46.67%), Postives = 125/195 (64.10%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSG-QETIKLAIRALLEV 659
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR +D + L V+K+    L +  SV KI   D+HI +A AG  ADAR LI+ AR + Q ++L   +PV VE +T+ I    Q+YTQ GG RPFG++ +I G     G P L++TDPSGT   WKA A G +   +R++LE++  E     E + LA+ AL  V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGI--VNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASV 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.631e-40
Identity = 81/200 (40.50%), Postives = 129/200 (64.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D + L  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +  WKA A G N+ + +  L+++ K + + +E ++LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.477e-39
Identity = 88/194 (45.36%), Postives = 125/194 (64.43%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLE 656
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR  + + L V+K++   L +  SV K+  +D+H+  A AG  ADAR L++ AR + Q  R+  ++P+ V  +T+ +    Q+YTQ GG RPFG++ LI G +   G P L++TDPSGT + WKA A G N   ++EFLE       S  + I LA+RAL E
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVE--GGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.477e-39
Identity = 88/194 (45.36%), Postives = 125/194 (64.43%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLE 656
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR  + + L V+K++   L +  SV K+  +D+H+  A AG  ADAR L++ AR + Q  R+  ++P+ V  +T+ +    Q+YTQ GG RPFG++ LI G +   G P L++TDPSGT + WKA A G N   ++EFLE       S  + I LA+RAL E
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVE--GGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 88/197 (44.67%), Postives = 125/197 (63.45%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNS-MREFLEKNCKETSGQETIKLAIRALLEVVE 665
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++  D I L V+K+   KL +  S+ KI  +DNHI +A +GL  DAR L++RAR+E Q +R++ ++ + VE +++ +    Q YTQ GG RP+G + LI G     G   L++TDPSGT   +KA   G   N+ M+ F E+   E S ++ I L ++AL    E
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGIS--DGQFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKALHAATE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.613e-39
Identity = 86/199 (43.22%), Postives = 126/199 (63.32%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET-SGQETIKLAIRALLEVVESG 671
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++  + + L  +KK   +L +  S+ KI  +D+++A   +GL ADARVL++ ARI  Q  ++T    V +E + + +A   Q+YTQ GGVRP+G+S +  G D     P L+  DP+GT + +KA A G   +++  FLE+  KE    +E + L I+AL   +E G
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG--PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEG 204          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.613e-39
Identity = 84/197 (42.64%), Postives = 117/197 (59.39%), Query Frame = 3
Query:   69 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN-CKETSGQETIKLAIRALLE 656
            M+     +T FSP G L Q+EYA  A  KG  A+GV+ TD + +  EKK+T  L DS ++ K+ +LD+H+    +G+  D RVL++ AR  CQ +RLT  +P+ +  + R I+ L Q++TQSGGVRPFG S L+ G D       LYQ DPSGTF  WKA + G+ S   R FLEK    E   ++ +  A+  L E
Sbjct:    1 MSESSYGLTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGN--HLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKE 195          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA1_HALVO3.887e-4044.72Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_THEVO5.077e-4045.23Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_NATPD5.077e-4045.64Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA1_HALMA5.077e-4046.67Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA4_ARATH6.631e-4040.50Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSMA_HALSA1.477e-3945.36Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.477e-3945.36Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA_METPE3.291e-3944.67Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_THEAC5.613e-3943.22Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSA2_TRYBB5.613e-3942.64Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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