CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.575e-39
Identity = 85/197 (43.15%), Postives = 125/197 (63.45%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATG-RNSNSMREFLEKNCKETSGQETIKLAIRALLEVVE 665
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++  D + L V+K+ + KL +S S+ KI  +D HI +A +GL  DAR L++RARIECQ +R++ ++ + VE + + +    Q  TQ GG+RP+G + LI G     G   L++TDPSGT   +KA   G     +M+ F E+   + + ++ I L ++AL    E
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVS--DGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSATE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 91/208 (43.75%), Postives = 128/208 (61.54%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET-SGQETIKLAIRALLEVV--ESGGKNIKVA 692
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++  D +AL  EKK   +L +  S+ KI  +D+ +A   +GL ADARVLI+ ARI  Q  ++T    + +E + + +A   Q+YTQ GGVRP+G+S +  G D     P L+  DP+GT + +K  + G   + +  +LEK  KE  S  E I++ I AL   V  ES  K  ++A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLDSIG--PRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADESSMKEPEIA 213          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.638e-38
Identity = 79/200 (39.50%), Postives = 129/200 (64.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D + L  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +  + ++P+ VE + + +   +Q YTQ GG+ PFG+S L  G+D   G   L+ +DPSG ++ WKA A G N+ + +  L+++ K + + +E ++LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGF-QLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDDITREEAVQLALKVLSKTMDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.206e-38
Identity = 85/206 (41.26%), Postives = 124/206 (60.19%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSV--RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT-GRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVESGGKN 680
            RYD+  T+FSP+G ++QVEYA+ A+R   A VG+   D I L  EKK+T KL DS +    K+  +D H+  A AG+ +DA +LIN AR+  Q      ++P+ VE +   I   +Q YTQ GG+RPFG+S L  G+D + G   LYQ+DPSG F+ WKA +  G NS   +  L  N K + S +E ++LA++ L + ++    N
Sbjct:    4 RYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGF-QLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNIN 208          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.023e-37
Identity = 83/197 (42.13%), Postives = 122/197 (61.93%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSG-QETIKLAIRALLEVVE 665
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++ ++ + L V+K+ T +L +  S+ KI  +D HI +A +GL  DAR L++RAR+E Q +R++  +P+ VE + + +    Q YTQ GG RP+G + LI G     G   L++TDPSGT   +KA   G    ++ +  E   +E +     I+L I+AL    E
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVS--DGEARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKALHAATE 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.023e-37
Identity = 83/216 (38.43%), Postives = 132/216 (61.11%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMR-EFLEKNCKETSGQETIKLAIRALLEVVES--GGKNIKVA 692
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  D + LGVEK+ T  L +S SV K+  +D+HI  A +GL ADAR +I  AR++ Q+HR T ++P  +E  T+ I  L  ++ +          RPFG++ LI G D +   P LY ++PSGT+  ++A A G  S   + E +++  K+ + +E   L ++ L +V+E     KN+++A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHG--PQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLA 219          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.862e-37
Identity = 83/197 (42.13%), Postives = 117/197 (59.39%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVE 665
            Y  ++T FSP G L Q+EYAL AV  G  +VG++ T+ + L  EKK    L D +S  K+  +  HI +  +G+  D RVL+ RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D   G P L+Q+DPSG + AWKA A G+N  + + FLEK   E    ++ I  AI  L E  E
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFE 200          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 88/200 (44.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFL-EKNCKETSGQETIKLAIRALLEVVE 665
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  D + L VEK+ T  L +  SV KI+ +D HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ I  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G  S      L E+  KE + QE   +A+  L +V+E
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVME 205          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 79/200 (39.50%), Postives = 125/200 (62.50%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKST-VKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVVES 668
            RYD   T+FSP+G L+QVEYALE++     A+G+  +D I L  E+K T   L+   S  K+  L++ IA+A AGL ADA +LIN ARI  Q++  T  + + VE + R ++ ++Q YTQ GG+RPFG+S +  G+D   G   LY ++PSG ++ WKA + G N+++ +  L+ + K +    + I+LA++ L +  +S
Sbjct:    5 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGY-QLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDS 203          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 84/197 (42.64%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVE 665
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + + L  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK   E    ++ I  AI  L E  E
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFE 200          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_METB69.575e-3943.15Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_PICTO2.133e-3843.75Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA4_PETHY3.638e-3839.50Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA4_DICDI6.206e-3841.26Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSMA_METMJ4.023e-3742.13Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSA5_SCHPO4.023e-3738.43Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA2_XENLA6.862e-3742.13Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA5_ORYSJ8.962e-3744.00Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA4_YEAST8.962e-3739.50Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA2_RAT8.962e-3742.64Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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