CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 84/197 (42.64%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVE 665
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + + L  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK   E    ++ I  AI  L E  E
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFE 200          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 84/197 (42.64%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVE 665
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + + L  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK   E    ++ I  AI  L E  E
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFE 200          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 8.962e-37
Identity = 84/197 (42.64%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVE 665
            Y  ++T FSP G L Q+EYAL AV  G  +VG++  + + L  EKK    L D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK   E    ++ I  AI  L E  E
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFE 200          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.170e-36
Identity = 86/200 (43.00%), Postives = 121/200 (60.50%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNC-KETSGQETIKLAIRALLEVVE 665
            YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  + + L VEK+ T  L +  SV KI+ +D+HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G  S      L++   K+ S QE   +A+  L +V+E
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVME 205          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 77/196 (39.29%), Postives = 120/196 (61.22%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK-ETSGQETIKLAIRALLEVV 662
            YDRA T+FSP+G L+QV YA EAV+KG  ++G++  + + +  EK+    L D   + KI  +D+HI +A AG+  D R+LI+ AR+    HRL   +P  VE + + +A ++Q YTQ GGVRPFG++ +  G +P  G   +Y+TDP G + ++KA A G       E  EK+ + + S +E  KLA++ L  ++
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNP-DGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAII 206          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.607e-36
Identity = 85/200 (42.50%), Postives = 121/200 (60.50%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNC-KETSGQETIKLAIRALLEVVE 665
            YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  + + L VEK+ T  L +  SV KI+ +D+HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G  S      L++   K+ + QE   +A+  L +V+E
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVME 205          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.294e-35
Identity = 78/214 (36.45%), Postives = 127/214 (59.35%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMRE-FLEKNCKETSGQETIKLAIRALLEVVESGGKNIKVAVMI 701
            YDR +  FSP+G +FQ+EYA+EA++ G+ ++G++  D + +  EK+    L D  SV KI+ +D+HI    +G+ ADAR+L++ AR+E Q+HR T ++P++VE        L  ++ +SGG      RPFG+S LI G D     P L+QTDPSGT++ + A A G  + + +  F E+  +  + +E   L ++ L +V+E       V + I
Sbjct:    8 YDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVD--ENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEEKLTKTSVEIAI 219          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.294e-35
Identity = 85/209 (40.67%), Postives = 123/209 (58.85%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVES--GGKNIKVAV 695
            Y  ++T FSP G L Q+EYAL AV  G  +VG++ ++ + L  EKK    L D +SV KI  +  HI +  +G+  D RVL+ RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D     P L+Q+DPSG + AWKA A G++  + + FLEK   E    ++ I  AI  L E  E     +NI+V +
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEENIEVGI 212          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 83/210 (39.52%), Postives = 124/210 (59.05%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE-TSGQETIKLAIRALLEVVES--GGKNIKVAV 695
            RY  ++T FSP G L Q+EYAL AV  G  +VG+  ++ + +  E K    L +  SV ++  + NHI +  +G+  D R+L+ +AR   Q++ LT ++P+ V  + + +A L Q+YTQSGGVRPFG+S LI G+D     P LYQ+DPSG + AWKA A G+N+ + + FLEK   E     + +  AI  L E  E      NI++ +
Sbjct:    5 RYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWD--NDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGKMTADNIEIGI 212          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 83/200 (41.50%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNC-KETSGQETIKLAIRALLEVVE 665
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + + L VEK+ T  L +  SV KI+ +D HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF      A G  S      L++   K+ + QE   +A+  L +V+E
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVME 205          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA2_MOUSE8.962e-3742.64Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN8.962e-3742.64Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN8.962e-3742.64Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA5A_ARATH1.170e-3643.00Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_AERPE1.996e-3639.29Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA5B_ARATH2.607e-3642.50Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5_TRYBB1.294e-3536.45Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA2_CARAU1.294e-3540.67Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2_DROME1.690e-3539.52Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA5_SOYBN2.883e-3541.50Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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