CB610989

Overview
NameCB610989
Unique NameCB610989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_PYRAE (Superoxide dismutase [Fe] OS=Pyrobaculum aerophilum GN=sod PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.605e-35
Identity = 79/188 (42.02%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLP LPY Y+ALEP IS EIMQLHHQKHHQ YV   N A+E+L +         +  +   + F+  GH+ HSIFW N+AP  +GGG+ P   +   I+  FG  E   ++ S     ++G GW  L  +   ++L++      +  +  A     LL +DVWEHAYYLQYKN +  Y+ N WNV+NW
Sbjct:    8 TLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGK-PGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLILQIEKHN--LMHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVNW 192          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCSC (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium scrofulaceum GN=sodA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.014e-35
Identity = 77/166 (46.39%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  220 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            LHH KHH  YV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FG  +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    1 LHHSKHHATYVKGVNDAVAKLQEARANDDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 161          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCIT (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium intracellulare GN=sodA PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.855e-35
Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  220 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FG  +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    1 LHHSKHHATYVKGVNDALSKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDRFRAQFSAAANGLQGSGWAVLGYDTLGNRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 161          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.026e-34
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 1
Query:  142 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            + +  LP L YDY  LEP I    + +HH KHH  YV N N A+E   +  NK     +  L+        A++ NGGGH  HS+FW+ ++P   GGGEP +  +   ID +F   + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:    1 MSSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDRVNEKY 199          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.898e-34
Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 1
Query:  142 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            + +  LP L YDY  LEP I    + +HH KHH  YV N N  +E   +  NK     +  L         A++ NGGGH  HS+FW+ ++P   GGGEP +  +   ID +F   + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:    1 MSSFQLPKLSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNKSLEELLCNLDTLPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDQVNEKY 199          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.649e-34
Identity = 73/188 (38.83%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 720
            LP+LPY Y ALEP IS E +++HH+KHHQAYV   N  + +L  A    +   +      + F+ GG+V H  FW N+ P  E GGE P   L   I+  FG  +   ++ S    + +GSGW  L       RL +      +  V   P    L+ +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:    8 LPELPYPYDALEPYISEEQLRIHHEKHHQAYVDGANGVLRKLDDARENGEEVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PDGRLAEYIEKDFGSFQRFKKEFSQAAVSAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILMVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 192          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.935e-33
Identity = 77/147 (52.38%), Postives = 93/147 (63.27%), Query Frame = 1
Query:  199 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 639
            I+ +IMQLHH +HH AYV N N   E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FG  E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      LVPLLGIDV
Sbjct:    2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLVPLLGIDV 144          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.935e-33
Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP*AW 762
            LP LPY YSALEP IS +IM LHH KHHQ+YV   NKA  +L +A    +   +   +  + F+G GH  HSIFW ++   H  G   P  +L   ID  FG   A  +  +     ++G GW  L       RL +  TA +  L ++   ++PLL +DVWEHAYYLQYKN +  Y+ + WNV++W+ A   +++     W
Sbjct:   82 LPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSM---HPNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEI-LTAEKHQLFSQW-DVIPLLPLDVWEHAYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVW 278          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCKA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium kansasii GN=sodA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 1
Query:  220 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FG  +    +  A    +QGSGW  LG DT   +L++    +     T  P  ++PLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:    1 LHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIIPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 161          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.638e-32
Identity = 79/196 (40.31%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 729
            LP+LPYDY+ALEP IS   ++ HH KHH AYV N+N AV   +   Q++  V  +       A  FN      NHS +W  + P   GGG  P  +L   I+  FG  +A ++     GA   GSGW WL LD     L V  T N +  +T   T  PLL +DVWEHAYYL Y+N +PDY+ + +  ++NW + +
Sbjct:    5 LPNLPYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDLDNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKP---GGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLDN--GTLKVTKTGNAENPMTAGQT--PLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVA 193          
The following BLAST results are available for this feature:
BLAST of CB610989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
SODF_PYRAE4.605e-3542.02Superoxide dismutase [Fe] OS=Pyrobaculum aerophilu... [more]
SODM_MYCSC6.014e-3546.39Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCIT7.855e-3545.78Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM2_BACAN1.026e-3438.83Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM2_BACCR3.898e-3438.35Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODF_METTM6.649e-3438.83Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODM_PIG1.935e-3352.38Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_BACSU1.935e-3339.11Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]
SODM_MYCKA3.300e-3344.31Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_SYNY31.638e-3240.31Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_G09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610989 ID=CB610989; Name=CB610989; organism=Citrus sinensis; type=EST; length=789bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCCTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTTTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAATATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAACATGGATTTCTTT
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