CB610989

Overview
NameCB610989
Unique NameCB610989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.638e-32
Identity = 80/198 (40.40%), Postives = 106/198 (53.54%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            T  L  LPY   AL P IS E ++ HH KH + YV N NK +  +       D +T+VQ  +G I  N G  +NH++++    P   G G  P   LG AID  FG  E   ++ +  G  L GSGWVWL  D   K L +E   N    V K   L PLLG DVWEHAYYL Y+N + D+LK++W++++W      Y
Sbjct:    2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 77/202 (38.12%), Postives = 110/202 (54.46%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            +LPDL Y Y+ALEP    E M++HH KHHQ Y+ N N  +E+        + L  +     ++ +  ++ N GGH+NHS+FWK L       G      L   I+  FG +E    K         GSGW+WL        +V  +T NQD PL+ K+ +     P+ G+D+WEHAYYL+Y+N + DY+K+ WNV+NW  AS
Sbjct:    4 SLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIFNEISLENKNVLRNNAGGHINHSLFWKGLKI-----GTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIV--STINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEAS 198          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 77/206 (37.38%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA-----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            LP L Y Y ALEP I    M++HH +HHQ YV   N A           VEQL + +  +       + GA++ +GGGH NHS+ W  ++P    GG  P   L   I    G  +A     +       GSGW WL + T   RL V+++ANQD  + +  T  P+LG+DVWEHAYYLQY+N +P+Y++  + V++W   +  Y+
Sbjct:    5 LPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPG----IHGAVRNHGGGHANHSLLWTVMSP---SGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTV-TPAGRLRVDSSANQDSPLMEGNT--PILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYE 200          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.365e-31
Identity = 78/200 (39.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVYQ 741
            LP+LPYDY AL P +S E ++ HH KHH AYVTN NK  E+    L+ +    +V+        +  N G H NH  FWK +     GGG      L  AI +  G  +      SA GA   GSGW WL +    K  + +T   ++PLV  A    P+LG+DVWEH+YY+ Y+N +P YL+  + N++NW Y  ++Y+
Sbjct:    5 LPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEE--AGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHFWKWMK--KGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVKNG-KLEISKTPNGENPLVHGA---TPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYE 196          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 79/199 (39.70%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL---FQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVY 738
            LP LP+DY+AL P I+ E ++ HH KHH AYV NYN AV+      Q +  V  +       A  FN      NHS +W ++ P    GG  P  +L   I   FG  E  + +     A   GSGW WL LD     L +  T N D  +    T  PLL IDVWEHAYYL Y+N +PDY+   +  + NW +AS  Y
Sbjct:    5 LPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDLDGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKP---NGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLDN--GTLKITKTGNADTPIAHGQT--PLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANY 196          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 73/195 (37.44%), Postives = 107/195 (54.87%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            T TLP LPY   AL P +S E ++ H+ KHH  YVTN NK +    F+++   +   +++ +G I  N     NH+ +W +++P   GGGEP    L  AI+  FG   A  ++ S   A   GSGW WL  D      ++ T+    P+      L  LL  DVWEHAYY+ Y+N +PDY++  W+++NW +AS
Sbjct:    2 TFTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEFESMTLEEI--IMKAKGGIFNNAAQVWNHTFYWHSMSP--NGGGEPK-GRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLVQDQSGALKIINTSNAGTPMTEG---LNALLTCDVWEHAYYIDYRNRRPDYIEAFWSLVNWDFAS 188          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_ACIAM (Superoxide dismutase [Fe] OS=Acidianus ambivalens GN=sod PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 75/204 (36.76%), Postives = 111/204 (54.41%), Query Frame = 1
Query:  142 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            L+   LP LPY+  ALEP IS EI+ +H+  HH+ YV   N  V+++ + L    +S    +QG ++   FN  GH  HS++W+N+AP  +GGG+P    +G  I+  +G  E      +    +L G+GW  L  + E   L + T  N          L  LL +D +EHAYYLQYKN + DY+ N WN++NW +A    Q+
Sbjct:    7 LKKYELPPLPYNLDALEPYISKEIIDVHYNGHHRGYVNGANSFVDRVNKILKGEISSGQYDIQGLLRGLVFNINGHKLHSLYWQNMAPAGKGGGKPG-GVIGDLIEKQYGSFEKFKALFTEAANSLPGTGWTVLYYEVENGNLQIMTFENH--FQNHIAELPILLILDEFEHAYYLQYKNKRADYVNNWWNLVNWDFADKKLQQ 207          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 73/193 (37.82%), Postives = 102/193 (52.85%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            TLP LPY   AL P IS E ++ H+ KHHQ YVTN N  +         +    +V+      FN    V NH+ +W +L+P   GGGEP   +L  AI   +G ++A  +  +   A   GSGW WL    +    +V T+    PL T    L   L  DVWEHAYY+ Y+N +P YL+N W ++NW++A+
Sbjct:    4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGT--EFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNSLSP--NGGGEPS-GALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKAL---LTCDVWEHAYYIDYRNARPKYLENFWALVNWEFAA 188          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 72/173 (41.62%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 657
            LP LPY Y ALEP I  +  ++HH KHH  YVTN N AVE    A   ++       +     Q A++ NGGGH NH++FW+ +AP   GG   P   +  AID  FG  +A  ++ +       GSGW WL +D +   + V +T NQD  V +  T  P+LG+DVWEHAYY
Sbjct:    5 LPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFADKDINDLIAMLDALPADKQTAVRNNGGGHANHTLFWEVIAP---GGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLIVDGD--SVAVTSTPNQDSPVMEGKT--PVLGLDVWEHAYY 170          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 74/190 (38.95%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 723
            LPDLPY  +ALEP IS E ++ HH KHH+AYV   NK +E       K     ++ +  G I  N   H NH+ +W  ++P  +GGG+ P   L  AID  FG LE      +       GSGW WL  D   K  V+ T   ++P+        PL+  DVWEHAYY+  +N +P Y+ N W V+NW +
Sbjct:    5 LPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEG--TPFEKEPLEEIIRKSDGGIFNNAAQHWNHTFYWHCMSP--DGGGD-PSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDF 186          
The following BLAST results are available for this feature:
BLAST of CB610989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
SODF_PORGI1.638e-3240.40Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_BUCAP3.649e-3238.12Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BORPE3.649e-3237.38Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODF_RHIME2.365e-3139.00Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_SYNE74.034e-3139.70Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_LEGPH4.034e-3137.44Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_ACIAM5.269e-3136.76Superoxide dismutase [Fe] OS=Acidianus ambivalens ... [more]
SODF_BORPE8.987e-3137.82Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODM_KLEPL1.174e-3041.62Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODF_COXBU1.174e-3038.95Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_G09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610989 ID=CB610989; Name=CB610989; organism=Citrus sinensis; type=EST; length=789bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCCTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTTTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAATATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAACATGGATTTCTTT
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