CB610989

Overview
NameCB610989
Unique NameCB610989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.372e-45
Identity = 93/195 (47.69%), Postives = 120/195 (61.54%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            TLPDL YDY ALEP ISG+I +LHH KHH AYV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FG  +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW+   + Y
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHAAYVKGVNDAVAKLDEARANGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNWEDVQNRY 194          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.093e-44
Identity = 95/204 (46.57%), Postives = 130/204 (63.73%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A + ++K
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.093e-44
Identity = 95/204 (46.57%), Postives = 130/204 (63.73%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A + ++K
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCLE (Superoxide dismutase [Mn] OS=Mycobacterium leprae GN=sodA PE=3 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.428e-44
Identity = 92/188 (48.94%), Postives = 119/188 (63.30%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLPDL +DY+ALEP ISGEI ++HH KHH AYV   N A+ +L +A  K D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L   ID  FG  +    + SA    LQGSGW  LG DT   +L+     +Q   V+    ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYAALEPHISGEINEIHHTKHHAAYVKGVNDALAKLDEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGGLATDIDETFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGNKLLTFQLYDQQANVSLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.865e-44
Identity = 94/202 (46.53%), Postives = 124/202 (61.39%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            LP+L Y Y ALEP I    M++HHQKHH AYVTN N A+E+         + L +  T+    +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG   AL +K++       GSGW WL  D  F +L V +TANQD  V       P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A ++Y+
Sbjct:    7 LPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVISTANQDNPVMGG--FAPIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEIYK 202          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.436e-44
Identity = 97/191 (50.79%), Postives = 116/191 (60.73%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            T  LP+L Y Y ALEP I+ EIM+LHH KHH  YV   N A+E+L +A    +   VV  L   + FN GGH NHSIFWKNL+P   GGGEP   +L  AI   FG  E      SA    LQGSGW  LG D    RLV+E   +Q   ++    L PLL +D+WEHA+YLQYKNVK DY+K +WNV NW
Sbjct:    2 TYALPELDYAYDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVVTALSKDLAFNLGGHTNHSIFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNISA--NLTPLLMLDMWEHAFYLQYKNVKADYVKAVWNVFNW 187          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCSM (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=4)

HSP 1 Score: 176.792 bits (447), Expect = 1.209e-43
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FG  +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCS2 (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.209e-43
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FG  +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.209e-43
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FG  +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTVGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.579e-43
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FG  +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
The following BLAST results are available for this feature:
BLAST of CB610989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
SODM_MYCFO8.372e-4547.69Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_THET81.093e-4446.57Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET21.093e-4446.57Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_MYCLE1.428e-4448.94Superoxide dismutase [Mn] OS=Mycobacterium leprae ... [more]
SODM_THEAQ1.865e-4446.53Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM_CORDI2.436e-4450.79Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM_MYCSM1.209e-4347.34Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCS21.209e-4347.34Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCPA1.209e-4347.87Superoxide dismutase [Mn] OS=Mycobacterium paratub... [more]
SODM_MYCAV1.579e-4347.87Superoxide dismutase [Mn] OS=Mycobacterium avium G... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_G09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610989 ID=CB610989; Name=CB610989; organism=Citrus sinensis; type=EST; length=789bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCCTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTTTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAATATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAACATGGATTTCTTT
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