CB610989

Overview
NameCB610989
Unique NameCB610989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.134e-40
Identity = 83/197 (42.13%), Postives = 120/197 (60.91%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG  +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVINW 191          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.134e-40
Identity = 95/210 (45.24%), Postives = 119/210 (56.67%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FG  +A  QK         GSGW WL +     +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+N +PDYL   WNV+NW   S  Y
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDG--KLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRY 207          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.640e-40
Identity = 84/200 (42.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +G L+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.640e-40
Identity = 84/200 (42.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +G L+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 86/202 (42.57%), Postives = 119/202 (58.91%), Query Frame = 1
Query:  151 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FG  E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 86/202 (42.57%), Postives = 119/202 (58.91%), Query Frame = 1
Query:  151 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FG  E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 85/209 (40.67%), Postives = 122/209 (58.37%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 747
            TLP+L Y Y+ALEP    + M++HH KHHQAYV N N A+E L   L ++    ++        + +GA++ N GGH NHS+FWK+L       G     +L  AI+  FG ++A   +     A   GSGW WL L  E K  VV T    +PL+ K        PLLG+DVWEHAYYL+++N +PDY+K  WNV+NW + ++ ++++
Sbjct:    4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQK 207          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.059e-39
Identity = 84/201 (41.79%), Postives = 121/201 (60.20%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW  L+P    GG  P  +L  AI++ FG  +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y++  WNV+NW  A+
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEAN 195          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.059e-39
Identity = 85/208 (40.87%), Postives = 122/208 (58.65%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL---VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            LP LPYDY +LEP +    M +HH KHHQ YV N N A+++    + L  VD +  V        +   I+ NGGGH NHS FWK +       G  P+  +  AI+  FG ++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PLLG+DVWEHAYYL+Y+N +P+Y+   WNV+NW+  ++ Y+
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPDGS-LSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWNVVNWEQVAENYK 209          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.807e-39
Identity = 85/201 (42.29%), Postives = 118/201 (58.71%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            T  LP LPY Y ALEP    E M+LH+ KHH  YVT  N+AV    +   K     V  L       +GA++ +GGGH NH++FW  L+P    GG  P   L  AI++ FG  +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW  A+
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVVNWDEAN 195          
The following BLAST results are available for this feature:
BLAST of CB610989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
SODM_LISIV2.134e-4042.13Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_DEIRA2.134e-4045.24Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_STAES3.640e-4042.00Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ3.640e-4042.00Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STRR64.754e-4042.57Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN4.754e-4042.57Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_HAEIN4.754e-4040.67Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_LISMO1.059e-3941.79Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_CHLRE1.059e-3940.87Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_LISIN1.807e-3942.29Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_G09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610989 ID=CB610989; Name=CB610989; organism=Citrus sinensis; type=EST; length=789bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCCTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTTTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAATATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAACATGGATTTCTTT
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