CB610989

Overview
NameCB610989
Unique NameCB610989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.359e-39
Identity = 83/202 (41.09%), Postives = 120/202 (59.41%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            LP+LPY++ ALEP I  E M++HH KHH  YVT  N A+E        + + +  +D S    +Q A++ NGGGH+NHS+FW+ L P  E  G          I   +G L+    + + + A   GSGW WL +D + K L + +T NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW    ++Y+
Sbjct:    5 LPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIEGTDLENKSIEEIVANLD-SVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKGTVIDK-----IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYIDAFWNVVNWNKVDELYE 197          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.359e-39
Identity = 87/204 (42.65%), Postives = 124/204 (60.78%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ----ALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+  +    +L ++  D S + + ++ A++ NGGGH+NHS FW  L P  +G        +G AI   FG  E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.359e-39
Identity = 87/204 (42.65%), Postives = 124/204 (60.78%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ----ALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+  +    +L ++  D S + + ++ A++ NGGGH+NHS FW  L P  +G        +G AI   FG  E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.082e-39
Identity = 88/203 (43.35%), Postives = 114/203 (56.16%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FG   A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WNV+NW   +  Y +
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDEVAKRYSE 200          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.082e-39
Identity = 87/203 (42.86%), Postives = 114/203 (56.16%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FG   A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WN++NW   +  Y +
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNIVNWDEVAKRYSE 200          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.082e-39
Identity = 86/203 (42.36%), Postives = 118/203 (58.13%), Query Frame = 1
Query:  169 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 744
            PY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FG  +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 216          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.025e-39
Identity = 84/204 (41.18%), Postives = 121/204 (59.31%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP LPY + ALEP I  E M++HH KHH  YVT  N          K++E++   L+ V +     +Q A++ NGGGH+NHS+FW+ L P  E  GE         I   +G L+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:    5 LPKLPYAFDALEPHIDKETMEIHHDKHHNTYVTKLNAVVEGTDLEAKSIEEIVANLDSVPSD----IQTAVRNNGGGHLNHSLFWELLTPNSEEKGEVVEK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.256e-39
Identity = 83/200 (41.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G          I   +G L+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:    5 LPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK-----IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNNG--NLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.256e-39
Identity = 83/200 (41.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 738
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G          I   +G L+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:    5 LPNLPYGFDALEPHIDKQTMEIHHDKHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK-----IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNNG--NLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
BLAST of CB610989 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.171e-38
Identity = 84/204 (41.18%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  151 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGFLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P  +       S +  AID  FG  +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEKQD----VTSDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          
The following BLAST results are available for this feature:
BLAST of CB610989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
SODM_STACA2.359e-3941.09Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_LACLM2.359e-3942.65Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA2.359e-3942.65Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_BACST3.082e-3943.35Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA3.082e-3942.86Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM1_BACCR3.082e-3942.36Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_STAEP4.025e-3941.18Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAXY5.256e-3941.50Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODM_STAS15.256e-3941.50Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_STRP31.171e-3841.18Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_G09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610989 ID=CB610989; Name=CB610989; organism=Citrus sinensis; type=EST; length=789bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCCTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTTTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAATATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAACATGGATTTCTTT
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