CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 63/96 (65.62%), Postives = 80/96 (83.33%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+ L  P G++   E  +D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+QM+ G++LTC++YPTSDC I +HKEE+L
Sbjct:    1 ATYKVTLKTPSGDQ-TIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+KL G +G +   +  +DQYILDAAEE G+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+  G++LTC++YPTSDC I +H+EE L
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   44 VYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            +YKI+L+  K G +       DQYILDAAEE GVDLPYSCRAGACSTCAGKLV GSVDQSD SFLD+ Q+  G++LTC++YPTSDCVIQ+H+EE L
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KLI P G + EFE  +D YIL+ AEE G+D+PYSCRAG+CS+CAGKLV+GSVDQSD SFLDD Q+E G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILD-AAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+ LI P+G++ EFE  +D YILD AAEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDGS+LDD+QMEAG++LTC++YPTSD  I++HKEEEL
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.728e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+ L+ P G +   E  +D+YILDAAEE G+DLPYSCRAGACS+CAGK+ SGSVDQSD SFL+D QME G++LTCI+YPT D  I++HKEEEL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ L+ P GE    +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +H+EEEL
Sbjct:    1 MATYKVTLVRPDGET-TIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 2
Query:   38 MAVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ LI  + G     E  +D+YILD AEE G+DLPYSCRAGACSTCAGK+  G +DQSD SFLDD+Q+EAGY+LTC++YP SDC I +H+EEEL
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ LI P GE   ++A +D+YILD+A +AG DLP SCRAGACSTCAGK+VSG+VDQS+ SFLDD+Q+EAGY+LTCI+YP SD  I+++KEEEL
Sbjct:    1 MATYKVTLITPDGEV-SYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNEN2.571e-3263.92Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_SCEQU2.571e-3265.63Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_GUITH3.358e-3265.98Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER2_CYACA3.358e-3268.75Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_SAMNI4.386e-3266.67Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_ARCLA4.386e-3269.07Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER2_SPIOL5.728e-3266.67Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_SYNLI7.482e-3264.95Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_SYNP49.771e-3264.29Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_SYNP29.771e-3267.01Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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