CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.849e-31
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 2
Query:   38 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YKI L+   +G +  F+  ED YILDAAEEAG++LPYSCRAGACSTCAGK+  GSVDQSD SFLDD Q+  GY+LTCI+YP SDC I +H E+EL
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.849e-31
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   20 PNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            P  + S   YK+ L  P G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD QM  G++LTC++YPTSDC IQ+H+EE L
Sbjct:   24 PASRMSCMAYKVTLKTPSGDK-TIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KLI P+G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPEGAV-EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 60/98 (61.22%), Postives = 80/98 (81.63%), Query Frame = 2
Query:   35 SMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            +MA YK+ LI  +     F+  +D Y+LD AEE G+DLPYSCRAG+CS+CAGK+V+GSVDQSD SFLDD+Q+EAG++LTC +YP++D  I++HKEEEL
Sbjct:   47 AMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A Y +KLI P GE    E  EDQYILDAAE+AG+DLPYSCRAGACS+C G +  G+VDQSD SFLDD+QM  G+ LTC +YPTS+C I++HKE++L
Sbjct:    1 ATYSVKLINPDGEV-TIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ L  P G+ +     +D+YILD AEE G+DLPYSCRAGACSTCAGKLVSG     D SFLDD+Q++AGY+LTC++YPT DCVI++HKEE L
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.411e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.411e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD +I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            +K+KL+ P G + EFE  +D YILD AEE G++LPYSCRAG+CS+CAGKLV G +DQSD SFLDD Q+E G++LTC +YP SD VI++HKEEEL
Sbjct:    2 FKVKLLTPDGPK-EFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEEL 94          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_PORPU4.849e-3166.33Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_CHLRE4.849e-3162.14Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_TOBAC6.334e-3164.58Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_SILPR6.334e-3161.22Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_EUGVI8.272e-3164.58Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_APHSA8.272e-3163.92Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_DATME1.411e-3062.50Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN1.411e-3062.50Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_SCOJA1.843e-3062.50Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_LEUGL1.843e-3064.89Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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