CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+KLI P G   EF+  ++ YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:   47 MASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KLI P G   EF+  +D YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:    1 ASYKVKLITPDGPI-EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 2
Query:   38 MAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YKI L+   +G +  F   ED YILDAAEE G++LPYSCRAGACSTCAGK+  G+VDQ+D SFLDD+Q+ AGY+LTCI+YP+SDC I +H E+EL
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 2
Query:    5 GLKC-SPNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            GLK  S   + +MA YK+ L+ P G   EF+  +D YILDAAEE G+DLPYSCRAG+CS+CAGKL +GS++Q D SFLDD+Q++ G++LTC +YP SD  I++HKEEEL
Sbjct:   38 GLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF   +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF   +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   41 AVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YKI L+   +G +   E  +DQYILDAAEE G+DLPYSCRAGACSTCAGKL+ G VDQSD SFLDD+Q++AG++LTC++YPTS+  I +H+EE L
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC +YP SD VI++HKE++L
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC +YP SD VI++HKE++L
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CAPAN1.843e-3062.89Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER_CAPAA1.843e-3063.54Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_PORYE2.407e-3064.29Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_DATAR2.407e-3062.50Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER1_SPIOL2.407e-3058.72Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_DATST3.143e-3062.50Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU3.143e-3062.50Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER3_CYACA3.143e-3063.92Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_ORYSJ3.143e-3063.54Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI3.143e-3063.54Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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