CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            Y + L  P GE+ + E   D YILDAAEEAGVDLPYSCRAG+CS+CAGK+ SG+VDQSD SFLDD+QM++G++LTC++Y TSDC I +H+EE L
Sbjct:    2 YMVTLKTPSGEQ-KVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KLI P G    F+  +++YILDAAEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLITPDGPV-VFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P+G + EFE  +D YILD AEE G+ LPYSCRAG+CS+CAGK+ +G V+QSDGSFLDD+Q+E G++LTC++Y  SD  I++HKEEEL
Sbjct:    1 ASYKVKLVTPEGTQ-EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 2
Query:   41 AVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YKI L+  + G +  F+  ED YILDAAEE G++LPYSCRAGACSTCAGK+  G+VDQSD SFLDD QM  GY+LTCI+YP SDC I +H E+EL
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEF----EAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ LI    EEH+     +  +D ++LDAAEEAG+DLPYSCRAGACSTCAGK+  G++DQS+ +FLDD+QM AG++LTCI+YP SDC I  H+E+EL
Sbjct:    1 MATYKVTLIS---EEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPI-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 56/96 (58.33%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+ L+ P G +   +  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+ +G+VDQ D SFLDD+Q+EAG++LTC++YP  D  I++HKEE++
Sbjct:    1 ATYKVTLVTPSGTQ-TIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDI 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 58/96 (60.42%), Postives = 76/96 (79.17%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+  + P G +       D Y+LDAAE+ G+DLPYSCRAGACS+CAGK+ +GSV+Q DGSFLD+ QMEAG++LTC++YPTSD  I++HKEE+L
Sbjct:    2 ASYKVTFVTPSGTK-TITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_DUNSA3.143e-3064.89Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_PHYAF4.105e-3062.50Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER_MEDSA4.105e-3062.50Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_ATRBE4.105e-3062.50Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER_PORUM5.362e-3064.95Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_THAWE7.003e-3060.40Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER_SOLNI7.003e-3061.46Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER2_HYONI9.146e-3061.46Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_PHYES9.146e-3058.33Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER2_PHYES1.194e-2960.42Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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