CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KLI P+G   EF   +D YILD+AEE G DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+Q+  G++LTC++YP S+  I++HKE++L
Sbjct:    1 ATYKVKLITPEGPV-EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KLI P G   EF   +D YILD AEE G DLPYSCRAGACS+CAGK+V GSVDQSD SFLDD+Q+  G++LTC++YP S+  I++HKEE L
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.037e-29
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            YK+ L  P GEE   E  ED YILDAAEEAG+DLPYSCRAGACS+CAGK+ SG VDQSD SFLDD QM  G++LTC++YPTSD  I +H+E  L
Sbjct:    1 YKVTLKTPSGEE-TIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.037e-29
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+ L    G E   +  ED +ILD AEE G+D+P+SCR+G+CSTCAGK+  G+VDQS+ +FLDD+QME GY+LTC++YPTSDC I +H+EEE+
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            +K+ L  P G+    + ++D+YILDAAEEAG+ LPYSCRAGACS+CAGK+ +G VDQSD SFLDD+QM+ GY+LTCI+YPTSD  I +H+EE L
Sbjct:    2 FKVTLNTPTGQS-VIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+  + P G  +      D Y+LDAAEE+G+DLPYSCRAGACS+CAGK+ +G+V+Q DGSFL++ QMEAG++LTC++YPTSD  I++HKEE+L
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.475e-29
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 2
Query:   47 YKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            Y + L+   K      +  +DQ+ILDAAEE G++LPYSCRAGACSTCAGK++SG++DQS+ SFLDD+QM AG+LLTC++YPTSDC +Q+H E++L
Sbjct:    3 YSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.475e-29
Identity = 56/93 (60.22%), Postives = 73/93 (78.49%), Query Frame = 2
Query:   50 KIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            K+KLI P+GEE E E  ED  IL++AE AG++LPYSCR+G C TC GKLVSG VDQS GSFL++ Q++ GY+LTCI+ P  DCV+ +HK+ +L
Sbjct:   55 KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.539e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF   +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.928e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEE L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SOLLY1.560e-2961.46Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_SOLLS1.560e-2964.58Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_CHLFU2.037e-2967.02Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_BRYMA2.037e-2958.33Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER_MARPO2.661e-2962.77Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER2_PHYAM2.661e-2959.38Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_BUMFI3.475e-2960.00Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER4_ARATH3.475e-2960.22Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER1_HYONI4.539e-2960.42Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_LYCCN5.928e-2960.42Ferredoxin OS=Lycium chinense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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