CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.336e-33
Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   88 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAV 402
            EG V +CH+ E W  +LQ+ I  K+L+ VDFTA+WC PC+++ P+  EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKK+DL+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.691e-31
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+K+DLQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.691e-31
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+K+DLQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.262e-29
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K +++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.262e-29
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K +++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.179e-29
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K +++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.414e-22
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            +E  +V+   +   W     +   + KL+VVDF+ASWC PC+++ P +  +A K   V F+K+DVDEL  VA+E+ V AMPTFVL K GK +ERI+GAKK++L+  V K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            G VI   +  +W+ QL KG    K IVVDFTA+WC PCK+++P+   L+      VIFLKVDVD + +VAE   + AMPTF + K+G   + +VGA ++ L+  V KH
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 110          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAV 402
            G V    T ESW+++L +     K++V +F+A+WC PCK+++P   EL++K  +++FL VDVDEL   +  W ++A PTF   K G+ + ++VGA K +LQ  V
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 36/100 (36.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDL 390
            G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL +DVDEL   +  W ++A PTF   ++G+ ++++VGA K +L
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TRXH_PICMA9.336e-3355.24Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ6.691e-3152.73Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI6.691e-3152.73Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRAOL6.262e-2954.21Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA6.262e-2954.21Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_BRARA8.179e-2954.21Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH2_ARATH7.414e-2245.87Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_CHLRE5.875e-1945.37Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRXH9_ARATH1.709e-1840.38Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC7.181e-1736.00Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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