CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K  L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K  L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.769e-15
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K  L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.769e-15
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K  L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.769e-15
Identity = 35/85 (41.18%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  157 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            +K+I++DF A+WC PCK ++P+  ELA     +IF KVDVDE + +  ++ V+ MPTF+ TK G  +E + G  +++L+  V +H
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.310e-15
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            A  KL+VVDF+A+WC PCK++ P    L++K   V+F++VDVD+ K +A E  V+ MPTF   K+G+ +    GA K  L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  130 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K  L+ ++ ++
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  130 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            + L+  I   KL+V DF A+WC PCK ++P L  +AK+   VIF+K+DVDE + VAE++ V AMPT ++ K G  +  +VGA +  ++  ++
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQ 104          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.941e-15
Identity = 41/107 (38.32%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   94 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEK 408
            QVIS   ++ +N+    G    K+I++DF A+WC PC+++SPI  + ++K  A  ++F KVDVD    ++EE  + AMPTF + K+G+ ++ +VGA    L+  V+K
Sbjct:    3 QVIS--NLDEFNKLTNSG----KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQK 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.722e-15
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  130 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAV 402
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K  L+  +
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_HUMAN1.354e-1544.19Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_BOVIN1.354e-1543.02Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MACMU1.769e-1543.02Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA1.769e-1543.02Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO1_CAEEL1.769e-1541.18Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_RABIT2.310e-1541.86Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_MOUSE3.017e-1540.63Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_ECHGR3.017e-1541.30Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_COPCM3.941e-1538.32Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_RAT6.722e-1541.94Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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