CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.722e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  127 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQ 393
            N QL K  A+ KL+V+DF A+WC PCK++SP L+EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   12 NGQLTK--ASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.779e-15
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            A +KL+VVDF+A+WC PCK++ P    L  K   V+F+++DVD+ + VA    V+ MPTF   K GK ++   GA K  L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  148 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            I+  +L++VDF A WC PCK ++P   E +K    ++F+KVDVDE+  V E+  + +MPTF + K G  ++ ++GA  + L+  +EK+
Sbjct:   15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 102          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.497e-14
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   94 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            +V+   + ESWN  + +       IV  FTA WC P   M+    ELA      +FL VDVDE+K VA +  V+AMPTF+  K+G  ++++VGA  ++++  V+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.497e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  148 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            +   KL+VVDF A+WC PCK ++P   + +       F+KVDVD+L  +A E  V AMP+F L K G+ +E IVGA    L+ +++
Sbjct:   15 VCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.554e-14
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF-VLTKEGKVLERIVGAKKNDLQLAVEK 408
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF    K+G+ +    GA K  L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATINE 104          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.554e-14
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  127 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-----ERIVGAKKNDLQLAVEK 408
            N++LQK +++   +VVDF A WCPPCK ++P+  +L+ K  +P V+ F KV+VD ++  A+++ + AMPTF+  KEGK +       I GA    L  A EK
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEK 109          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 3.336e-14
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  160 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAV 402
            KL+VVDF A+WC PCK+++P++ + A++     F K+DVDE+  VA++  V +MPT +  K GK + R+VGA    ++ A+
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 100          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  109 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQ 393
            H     + QL K  A+ KL+V+DF A+WC PCK++SP L EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   14 HLQADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLE 107          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  154 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            A  L++VDF A WC PC++++PIL  LA +LP V   K+++DE    AE + V ++PT +L K+G  + R+VG K K  L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO2_DROYA6.722e-1546.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO_CHICK8.779e-1541.18Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PLAF71.147e-1438.64Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
TRXL4_ARATH1.497e-1437.50Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
TRX1_SCHPO1.497e-1441.86Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PONAB2.554e-1443.68Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_FUSCU2.554e-1441.18Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
TRX2_YEAST3.336e-1441.98Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO2_DROME4.357e-1443.75Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_CHLPN5.690e-1442.53Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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