CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  112 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL-PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            T +S++ +  +G+     ++ DF A WC PCK+++P+L EL +++   +  +K+DVDE +  A ++ V ++PT ++ K+G+V+E  VG K K  LQ  V KH
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  103 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDL 390
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  LA+K  +  + LK+DVD+ + + E + V +MPTFV  ++ + L    GA ++ L
Sbjct:    3 SVRTMNDYHKRIEA--ADDKLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKL 97          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 27/86 (31.40%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  154 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            A +LI++DF A+WC PC+++SPI  + + +     FLKV+ D  + + + + + AMPTF+  K  + ++ + GA +  +   + +H
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 33/105 (31.43%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   97 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            V+   +   + E L+  +  K L+VV F A W P C  M+ +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   +L   V++H
Sbjct:   15 VVEVGSARQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 31/86 (36.05%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  160 KLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKNDLQLAVEKH 411
            K ++VDF ASWC PC ++ P++ +LA       I  K++VDE  ++A ++ + ++PT ++ K GKV++++VGA  KN +   +++H
Sbjct:   21 KAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEH 106          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAV 402
            A ++L+ VDF+A+WC PC+ + P    L+ K   V+FL+VD D  + V  E A+  +PTF   K+ + ++ + GA K  L+  +
Sbjct:  466 AGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVI 549          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  148 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 378
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD     A  + V ++PT +L K+G+ ++RIVGAK
Sbjct:   22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  148 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 378
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD     A  + V ++PT +L K+G+ ++RIVGAK
Sbjct:   22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  112 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 378
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KV+ DE + ++ ++ + ++PT + TK+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  112 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 378
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KV+ DE + ++ ++ + ++PT + TK+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_BACSU6.956e-1236.27Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO1_DROME9.085e-1236.08Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]
NGLY1_CAEEL9.085e-1231.40Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
GLRX3_RAT1.186e-1131.43Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
THIO_CHLLT1.550e-1136.05Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
TXND2_HUMAN2.024e-1135.71Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
THIO_MYCTU2.024e-1139.74Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO2.024e-1139.74Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_HELPY2.024e-1134.44Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.024e-1134.44Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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