CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  169 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K +L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  169 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K +L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  169 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K +L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  169 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K +L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  169 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KNDLQLAVEKH 411
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K +L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  166 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKND 387
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K  D
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDED 155          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  166 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKND 387
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K  D
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDED 155          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  166 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKND 387
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K  D
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDED 155          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  166 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKND 387
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K  D
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDED 155          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            A  K +V+D    WC PCK M+P   +LA++   VIFLK+D + E K++A+E  +  +PTF + KE  V+  + GAK + L  A++
Sbjct:  100 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQ 185          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_STAAM3.452e-1139.76Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC3.452e-1139.76Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB3.452e-1139.76Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA83.452e-1139.76Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA33.452e-1139.76Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIOM_RAT3.452e-1142.67Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE3.452e-1142.67Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN3.452e-1142.67Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIOM_BOVIN4.509e-1142.67Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_SPIOL5.888e-1139.53Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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