CB611026

Overview
NameCB611026
Unique NameCB611026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9356 contig Csv1_Contig9356:200..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 54/111 (48.65%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            FKDE  FE+R  E+  I  ++ DR+PVI E+   +D+ +++K+K+LVP D+SVGQF++++  R+ L   KA+F+F+ D LP TA LM ++Y   KDEDGFLY+ YS E TF
Sbjct:    5 FKDEHPFEKRKAEATRITQRFNDRLPVICEKAENSDIQEIDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTF 115          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTFSY 411
            FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +Y   KDEDGFLY+ YS E TF +
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTFSY 411
            FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +Y   KDEDGFLY+ YS E TF +
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTFSY 411
            FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +Y   KDEDGFLY+ YS E TF +
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTFSY 411
            FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +Y   KDEDGFLY+ YS E TF +
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +Y   ++ED FLY+ YS E  +
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVY 115          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +Y    +ED FLY+ YS E  +
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +Y    +ED FLY+ YS E  +
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +Y    +ED FLY+ YS E  +
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +Y    +ED FLY+ YS E  +
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
The following BLAST results are available for this feature:
BLAST of CB611026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ATG8_DEBHA1.680e-2748.65Autophagy-related protein 8 OS=Debaryomyces hansen... [more]
GBRL2_RAT7.058e-2648.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_MOUSE7.058e-2648.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN7.058e-2648.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN7.058e-2648.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB2.682e-2546.85Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR5.975e-2546.85Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA5.975e-2546.85Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT5.975e-2546.85Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE5.975e-2546.85Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_C04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611026 ID=CB611026; Name=CB611026; organism=Citrus sinensis; type=EST; length=697bp
GGGGAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTTGAGACGATAC
GGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACATTCGAGCAAA
GACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGATCGAGTCCCC
GTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATATGGAAAAGAA
AAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTTATTCACATTT
TAAGCAGCAGGCTTCACCTGACCCCTGGAAAGGCTCTCTTTGTATTTGTG
AAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAGTCTATGGATC
CTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGCAGTGAGAAAA
CCTTTAGTTATGAAAGAATTCAGACTTGTTAATACTTGAACTTTGTTCAT
GGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGTGAAATGATGT
ATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCTTAGTTTATTC
TGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGATATAACTTGCG
TGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGTTTCATATGCA
ATCTATTTTTTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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