CB611026

Overview
NameCB611026
Unique NameCB611026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9356 contig Csv1_Contig9356:200..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 49/111 (44.14%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +K+   FE R +E  +I  KYPDRVP+I E+  KA +PD++++K+LVP D++ GQF  ++  R+HL P  ALF FV +T+P T+  M  +Y    +ED FLY+ YS+E  +
Sbjct:    5 YKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVY 115          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   67 QSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPG-----KALFVFV-KDTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            +SFK E++ E+R   S +I  +Y DR+P+I ER + +D+PD+ KKKFL P +M +  F  I+  R HL        KA+F+FV K+ LP ++ L+ S+Y + KDEDGFLY+CYS E TF
Sbjct:    6 KSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNF--IMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTF 122          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   55 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-DTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VY S KDEDGFLYM Y+S++TF
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   55 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-DTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VY S KDEDGFLYM Y+S++TF
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETF 119          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   55 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VY S +DEDGFLYM Y+S++TF
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETF 119          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   55 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VY S +DEDGFLYM Y+S++TF
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETF 119          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   55 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-DTLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VY S KDEDGFLYM  +S++TF
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETF 119          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   64 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTF 405
            ++ FK   +   R EE   I AK+P+++PV+ ERY +   LP ++K KFLVP+++++ QF+ I+ SR+ L   +A ++ V + +L   +  M  +Y  +KDEDGF+YM Y+S++TF
Sbjct:   10 VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF 125          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTFSY 411
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +Y   KDEDGFLYM Y+S++TF +
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CB611026 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   73 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYGSFKDEDGFLYMCYSSEKTFSY 411
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +Y   KDEDGFLYM Y+S++TF +
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of CB611026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GBRL3_HUMAN3.279e-2344.14Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI4.734e-2246.22Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3B_HUMAN4.899e-1942.86Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN1.091e-1842.86Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT3.176e-1841.18Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE3.176e-1841.18Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN5.417e-1842.02Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3C_HUMAN1.207e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN4.585e-1738.26Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT5.989e-1738.26Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_C04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611026 ID=CB611026; Name=CB611026; organism=Citrus sinensis; type=EST; length=697bp
GGGGAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTTGAGACGATAC
GGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACATTCGAGCAAA
GACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGATCGAGTCCCC
GTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATATGGAAAAGAA
AAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTTATTCACATTT
TAAGCAGCAGGCTTCACCTGACCCCTGGAAAGGCTCTCTTTGTATTTGTG
AAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAGTCTATGGATC
CTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGCAGTGAGAAAA
CCTTTAGTTATGAAAGAATTCAGACTTGTTAATACTTGAACTTTGTTCAT
GGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGTGAAATGATGT
ATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCTTAGTTTATTC
TGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGATATAACTTGCG
TGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGTTTCATATGCA
ATCTATTTTTTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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