CB611035

Overview
NameCB611035
Unique NameCB611035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.047e-56
Identity = 108/190 (56.84%), Postives = 142/190 (74.74%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            MK I++++ ++IPEG+ V + ++++ V+GPRG L RNFKHL +D  ++       R LK++ WFGS+K  AA+RT  SHV+N+I GVTKG++YKMR V+AHFPIN      +  IEIRNFLGEK +RRV+M  GVTV+ S K KDELI++GN +E VS SAALI Q   VKNKDIRKFLDG+YVSEK T+
Sbjct:    1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 185          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.285e-56
Identity = 112/194 (57.73%), Postives = 139/194 (71.65%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.844e-55
Identity = 107/191 (56.02%), Postives = 141/191 (73.82%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 628
            M+TI S++ ++IP+ +K  + A+++ + G RG L R+FKHL LD ++       KR LK++ WFG++K  AA+RT  SH++N+I GVT G++YKMR V+AHFPIN   +  +  IEIRNFLGEK +RRVEM  GVTV+ S   KDELI++GNDIE VS SAALI Q   VKNKDIRKFLDG+YVSEK T+V
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYM-----PDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.947e-54
Identity = 99/190 (52.11%), Postives = 140/190 (73.68%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            MK I SS  ++IPE V V +  + ++V GPRG LS++F H ++D +L+     GK++L +D WFG+RK  A I+T  S ++N+ITGVTKGY YKMRFV+AHFPIN ++ +  + +EIRNF GEK VRR+E+LDG+T  R++K KDE++L GN +EL+S+S A I  +  +K KD+RKFLDGIYVSE+  +
Sbjct:    1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.119e-51
Identity = 100/194 (51.55%), Postives = 138/194 (71.13%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MK I S++T+  PEGV   +  +I+ V GPRG + ++F+HL+++   +     GK  L++  WFG RK  AAIRT  SH++N+I GVT G+RYKMR V+AHFPIN ++ + ++++EIRNFLGEK VRRV + +GV    S   KDE++++GND++ VS++AA I Q   VK KDIRKFLDGIYVSEK TIV  D
Sbjct:    1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI-----GKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.732e-51
Identity = 104/193 (53.89%), Postives = 138/193 (71.50%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANAD--KSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 628
            MK I + + +EIPEGV V I ++I++V GPRG L++N KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+V+AHFPIN +I   D  K IE+RNFLG+KK+R V + DGVT+  S  VKDE++L GN +E VS++AA + Q C V+NKDIRKFLDGIYVS KG IV
Sbjct:    1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFT-----KVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 3.318e-50
Identity = 102/192 (53.12%), Postives = 137/192 (71.35%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANAD--KSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            MK I + + +E+PEGV V I ++I++V GPRG L++N KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+V+AHFPIN +I   D  K IE+RNFLG+KK+R V + DGVT+  S  VKDE++L GN +E VS++AA + Q C V+NKDIRKFLDGIYVS KG I
Sbjct:    1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFT-----KVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.067e-48
Identity = 101/189 (53.44%), Postives = 131/189 (69.31%), Query Frame = 2
Query:   59 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            + I   ET+ IPEGV V I A+++ V+GPRG L +N + +  D  L   G T    +K   W GSRK +A IRTA S + N+I GVT+G+RYKMR V+AHFPIN ++      +EIRNFLGE+  R ++ L GVTV  S  VKDE+I++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+G I
Sbjct:    3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRV--DIELKKQGNT----IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.013e-47
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 2
Query:   59 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            + I   ET+ IP+GV V I A+ + V GPRG L +N +H+  D  +   G T    +K   W GSRK +A IR+  S + N+I GVT+G+RYKMR V+AHFPIN ++      +EIRNFLGE+  R ++ L GVTV  S  VKDE+IL+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+G I
Sbjct:    3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHV--DIEMKKQGNT----IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.176e-37
Identity = 82/188 (43.62%), Postives = 127/188 (67.55%), Query Frame = 2
Query:   59 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 619
            K +  +E + +PEGV+V I+   + V+GP+G+L+R+F H       + + E GK K+ ++A+F +R+  A + T  +H++N+ITGVTKG+RYK++ V++HFP+   +   DK + I NFLGEK  R  +++ GVTV    KV KD++I++G DIE V ++AA I Q   VK+KD R F+DGIY+ EKG
Sbjct:    3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEGK-KVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKV-QGDK-VVIENFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEKG 183          
The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_SPOFR4.047e-5656.8460S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_PONAB5.285e-5657.7360S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_DROME5.844e-5556.0260S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_DICDI4.947e-5452.1160S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL5.119e-5151.5560S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST8.732e-5153.8960S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST3.318e-5053.1360S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO1.067e-4853.4460S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO2.013e-4752.3860S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL6_HYPBU7.176e-3743.6250S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bp
GGGGGAGGGTTTAGGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTT
TCATCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGG
GTGAAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGG
TAAGCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGA
CTGATGGGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGG
TCTCGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAA
CCTCATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCC
ACGCTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATT
GAGATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCT
TGACGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTC
TTGATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAAT
CAGAAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGAT
CTATGTCAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGCTAGCTTTCA
AATTTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTT
TGCCCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTA
GAGGGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTA
TCAAATGGATTTTATACCTATTTGCCTGCAAAAAAAAAAAAAAAAAAAA
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