CB611035

Overview
NameCB611035
Unique NameCB611035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.211e-33
Identity = 70/183 (38.25%), Postives = 115/183 (62.84%), Query Frame = 2
Query:   59 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 607
            K +     +++PEGV+V++    ++V GP+G+L R+F H      +    E GK+++ ++ +F +RK  A + T  +H++N+ITGVTKG+RYKM+ V +HFPI+  +      +EI NF+GEK  R  ++L GVTV    +   ++I++G DIE V+++AA I Q   +   D R F+DGIY+
Sbjct:    3 KAVWVHALVDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVG--DRVEIHNFIGEKAPRVAKVLPGVTVKVQGR---DVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 64/131 (48.85%), Postives = 93/131 (70.99%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEM 448
            MK + S++T++ P+GV   +  +++ V GPRG L R+F+HL+++         GK +L++  WFG RK  AAIRT  SH+QN+I GVTKG+RYKMR V+AHFPIN ++ +  +++EIRNFLGEK VR V +
Sbjct:    1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEME-----RVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 69/182 (37.91%), Postives = 112/182 (61.54%), Query Frame = 2
Query:   74 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 619
            +E +EIPE V V+++   + V+GP+G ++R+F H    F  + D     R + ++ +   RK  A + T  +H++N+ITGV +GYRYK++ + +HFPI  S+   +K + IRNF+GEK  R  ++   V V  S    +++I++G DIE V  +AA I +   V ++D R F+DGIY+ EKG
Sbjct:    8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKG 181          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.508e-29
Identity = 69/181 (38.12%), Postives = 113/181 (62.43%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 619
            E ++IPE V V+IN   ++V GP+G + R+F H+    +++   E  K  + ++ +F  R+  A + T  SH++N+I GV KGYRYK++ +++HFPI   + + ++ + I+NFLGEK   R+  + G  V  + K +D +I++G DIE V ++AA I     VK+KD R F DGIY+ + G
Sbjct:    9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-DRIAKIIGEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIYDWG 182          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.395e-29
Identity = 65/194 (33.51%), Postives = 114/194 (58.76%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 634
            MK +   E +EIP+G+ V I    I+V+GP+G++ ++F H++       +      K+ ++  F  R+  A   + ++H++N+ TGVTKGYRY ++ ++ HFP+   ++     ++I+N +GEK +RR +++ GV V     VK +++I++G DIE V ++AA I     +   D R F DGIY+ +K  I  E
Sbjct:    1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-----GIEIRKEDNKIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSG--NEVQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSE 183          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.314e-27
Identity = 69/184 (37.50%), Postives = 112/184 (60.87%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            E +E+PEGV V I+   ++V GP+G++ R+F H       + D       + ++++F   +  A +     H++N+I GV  G+RYK++ +++HFPIN  +   DK I I NFLGEK +R   ++ GV V    +VK  ++I++G D+E V+++AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:    9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27
Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V +    ++V+GP+G+L R  K+  +         T   K+ I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ V++HFP+   +   +  + I NFLGEK  RR ++L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDE--VVIENFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 70/180 (38.89%), Postives = 104/180 (57.78%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V I   +++V GP+G+L R  K+  +         T   K+ I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ V++HFP+   +   +  + I NFLGEK  RR ++L GVTV     +  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDE--VVIENFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V +    ++V+GP+G++ R      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ V++HFPI   +   +  IE  NFLGEK  RR ++L GVTV    KVK  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 70/181 (38.67%), Postives = 106/181 (58.56%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V +   +++V+GP+G+L R  K+  +         T   K+ +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ V++HFP+   +   +  IE  NFLGEK  RR ++L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_IGNH48.211e-3338.2550S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL9_HAECO2.389e-3248.8560S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_DESK12.236e-3037.9150S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_STAMF5.508e-2938.1250S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_SULTO9.395e-2933.5150S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_AERPE2.314e-2737.5050S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_PYRKO6.733e-2738.6750S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_THEON8.793e-2738.8950S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_PYRAB1.148e-2640.8850S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]
RL6_THEGJ1.959e-2638.6750S ribosomal protein L6P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bp
GGGGGAGGGTTTAGGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTT
TCATCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGG
GTGAAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGG
TAAGCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGA
CTGATGGGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGG
TCTCGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAA
CCTCATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCC
ACGCTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATT
GAGATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCT
TGACGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTC
TTGATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAAT
CAGAAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGAT
CTATGTCAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGCTAGCTTTCA
AATTTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTT
TGCCCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTA
GAGGGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTA
TCAAATGGATTTTATACCTATTTGCCTGCAAAAAAAAAAAAAAAAAAAA
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