CB611035

Overview
NameCB611035
Unique NameCB611035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.558e-26
Identity = 60/190 (31.58%), Postives = 112/190 (58.95%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            M+ ++  E +EIP+ V V +   II+++GP+G++ ++F        +  DG     K+ ++  F +R+  A   + +SH++N+ITGVTKGYRY ++ ++ HFP +  +      ++I N +GEK  RR ++L+GV V       ++++++G ++E V+++AA I     +   D R F DGI++ +K  I
Sbjct:    1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAK-GIQISLDGN----KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVG--NEVQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 73/181 (40.33%), Postives = 107/181 (59.12%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V +    ++V+GP+G+L R F    +        E G   +  D  F  RK  A  RT  +H++N+I GVT+G+ YK++ V++HFPI+  +   +  IE  NFLGEK  R+ ++L GVTV    KV+  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 72/181 (39.78%), Postives = 106/181 (58.56%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ V++HFPI   +   +  IE  NFLGEK  RR ++L GVTV    KVK  E+I++G D E   ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 63/179 (35.20%), Postives = 107/179 (59.78%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            +E+P+GV V ++   +  +G +G++SR F+   +   + TDG     K+ ++     ++T A + T  SH++N++TGV++GY Y M+ V+AHFPI   +   DK + I NFLGE+K R   ++    V ++ DKV    +L G + E + ++AA I Q C ++ +D R F DGIY++ K
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGG----KVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E +EIPE V V++N   + V+    +L R+  +  ++        T   K+ I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   +AHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E +EIPE V V+IN   + V+    +L R+  +  ++        T   K+ I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   +AHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24
Identity = 64/178 (35.96%), Postives = 106/178 (59.55%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            ++IP+GV V+I+ + + V+GP+G+LSR   + +++       +    K+ I +    ++  A + T  +H++N+I GVT G+ Y+MR V++HFPI   +  AD  + I NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY+ EK
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E +EIPE V V+IN   + V+    +L R   +  ++        T   K+ I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   +AHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +++++ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 56/190 (29.47%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            +K     E ++IP+ VKV +   +++V+GP+G++ ++F +       + +G     K+ ++  F  R+  A + + ++H++N+ITG   GYRY ++ +  HFPI+  ++  +  +++ N +GEK +RR ++L GV V       ++++++G+DI  V+++AA I     +   D R F DGIY+ +K  I
Sbjct:    4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 68/183 (37.16%), Postives = 101/183 (55.19%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E +EIP  V V+IN   + V+    +L R+  +  ++        T   K+ I+  F  +  +A + T  SH+QN+I GVT G+ YK+   +AHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_SULSO2.558e-2631.5850S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_PYRFU9.722e-2640.3350S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_PYRHO2.829e-2539.7850S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_UNCMA3.694e-2535.2050S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_METM73.694e-2537.7050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM53.694e-2538.2550S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METTP1.075e-2435.9650S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METMP1.833e-2437.1650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_SULAC5.335e-2429.4750S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_METM69.099e-2437.1650S ribosomal protein L6P OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bp
GGGGGAGGGTTTAGGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTT
TCATCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGG
GTGAAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGG
TAAGCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGA
CTGATGGGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGG
TCTCGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAA
CCTCATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCC
ACGCTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATT
GAGATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCT
TGACGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTC
TTGATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAAT
CAGAAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGAT
CTATGTCAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGCTAGCTTTCA
AATTTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTT
TGCCCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTA
GAGGGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTA
TCAAATGGATTTTATACCTATTTGCCTGCAAAAAAAAAAAAAAAAAAAA
back to top