CB611035
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.558e-26 Identity = 60/190 (31.58%), Postives = 112/190 (58.95%), Query Frame = 2 Query: 56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625 M+ ++ E +EIP+ V V + II+++GP+G++ ++F + DG K+ ++ F +R+ A + +SH++N+ITGVTKGYRY ++ ++ HFP + + ++I N +GEK RR ++L+GV V ++++++G ++E V+++AA I + D R F DGI++ +K I Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAK-GIQISLDGN----KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVG--NEVQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26 Identity = 73/181 (40.33%), Postives = 107/181 (59.12%), Query Frame = 2 Query: 77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 E +EIPEGV+V + ++V+GP+G+L R F + E G + D F RK A RT +H++N+I GVT+G+ YK++ V++HFPI+ + + IE NFLGEK R+ ++L GVTV KV+ E+I++G D E V ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEK 177
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25 Identity = 72/181 (39.78%), Postives = 106/181 (58.56%), Query Frame = 2 Query: 77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 E +EIPEGV+V + ++V+GP+G++ + + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ V++HFPI + + IE NFLGEK RR ++L GVTV KVK E+I++G D E ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25 Identity = 63/179 (35.20%), Postives = 107/179 (59.78%), Query Frame = 2 Query: 83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 +E+P+GV V ++ + +G +G++SR F+ + + TDG K+ ++ ++T A + T SH++N++TGV++GY Y M+ V+AHFPI + DK + I NFLGE+K R ++ V ++ DKV +L G + E + ++AA I Q C ++ +D R F DGIY++ K Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGG----KVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25 Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 2 Query: 68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 L E +EIPE V V++N + V+ +L R+ + ++ T K+ I+ F + +A + T SH+QN+ITGVT G+ YK+ +AHFP+ S ++ I NFLGEK R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25 Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 2 Query: 68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 L E +EIPE V V+IN + V+ +L R+ + ++ T K+ I+ F + +A + T SH+QN+ITGVT G+ YK+ +AHFP+ S ++ I NFLGEK R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24 Identity = 64/178 (35.96%), Postives = 106/178 (59.55%), Query Frame = 2 Query: 83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 ++IP+GV V+I+ + + V+GP+G+LSR + +++ + K+ I + ++ A + T +H++N+I GVT G+ Y+MR V++HFPI + AD + I NFLGE+K R ++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ EK Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24 Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 2 Query: 68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 L E +EIPE V V+IN + V+ +L R + ++ T K+ I+ F + +A + T SH+QN+ITGVT G+ YK+ +AHFP+ S ++ I NFLGEK R +++DGVTV S +++++ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24 Identity = 56/190 (29.47%), Postives = 111/190 (58.42%), Query Frame = 2 Query: 56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625 +K E ++IP+ VKV + +++V+GP+G++ ++F + + +G K+ ++ F R+ A + + ++H++N+ITG GYRY ++ + HFPI+ ++ + +++ N +GEK +RR ++L GV V ++++++G+DI V+++AA I + D R F DGIY+ +K I Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24 Identity = 68/183 (37.16%), Postives = 101/183 (55.19%), Query Frame = 2 Query: 68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 L E +EIP V V+IN + V+ +L R+ + ++ T K+ I+ F + +A + T SH+QN+I GVT G+ YK+ +AHFP+ S ++ I NFLGEK R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177 The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bpback to top |