CB611035

Overview
NameCB611035
Unique NameCB611035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 67/180 (37.22%), Postives = 103/180 (57.22%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E ++IPE V+V+IN   + V+    +L R F+H  +      D      ++ I   +  RK  A + T  +H+ N+I GVT+G+ YK++  +AHFP+  S+   +  IE  NFLGEK  RR  +++GVTV  S    +++I+ G D E V ++AA I Q   +K +D R F DGIY+ EK
Sbjct:    9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGD------EIVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 69/184 (37.50%), Postives = 105/184 (57.07%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E + IP+GV V I+  +  V+GP+ +LSR F H  +   +  D      K+ ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ V+AHFP++  +A  DK + I NFLGE+  R    +    V    +VK DE+ + G + E V ++ A I Q   +K +D R F DGIY+  K
Sbjct:    6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVA-GDK-VVIENFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 64/181 (35.36%), Postives = 103/181 (56.91%), Query Frame = 2
Query:   74 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            + T+EIPEGV V ++  +   +GP+G + R F +  +        E  + ++ +DA    ++  A + T  SH++NLI GV++G+  KM  V+AHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+++ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKI------EVREGEVVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKVEG--KTLVIGNFLGEKKPRIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 67/180 (37.22%), Postives = 102/180 (56.67%), Query Frame = 2
Query:   77 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPEGV+V IN   + V+GP G+ SR F + N+D   +T+ E     + ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V AHFP+   + N D  + I NFLGE+  R  +++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+  K
Sbjct:    9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV-NKD-VVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 61/176 (34.66%), Postives = 98/176 (55.68%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 607
            + IP GV V ++  ++ V+GP+G L R+  +  ++  +      G   ++       +  ++ + T  SH  N+ TGVTKGY Y M+ V++HFPI   +    +++EI NFLGEK  R   +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY+
Sbjct:    7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKVVG--ETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYI 170          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 63/184 (34.24%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E +EIP  V V++N   + V+     L R      ++  +  +      K+ +++ F  +  +A + T  SH+QN+I GV++G+ YK+   +AHFP+  +      ++ I NFLGEK  R  ++++GVTV    KV  +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 63/184 (34.24%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            L  E +EIP  V V++N   + V+     L R      ++  +  +      K+ +++ F  +  +A + T  SH+QN+I GV++G+ YK+   +AHFP+  +      ++ I NFLGEK  R  ++++GVTV    KV  +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 63/178 (35.39%), Postives = 102/178 (57.30%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            +EIPE V  + +   I VEG  G ++R   + ++D  +  DG+T    + I++   + KT + I T  SH++N+  GVT+G+ Y M   ++HFP+  ++   +  + I NFLGEK  RR   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct:    6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 62/181 (34.25%), Postives = 101/181 (55.80%), Query Frame = 2
Query:   74 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            + T+EIPEGV V +   +    GP+G + R   +  +    M D + G+  + +DA +  ++  A + T  SH++NL+ GV +G+  KM  V+AHFP+   +    K++ I NFLGEKK R  +++    V  S    +++ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKVDG--KTLIIGNFLGEKKPRFAKIIGETKVKVSG---NDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 2
Query:   74 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            +E + IPE V V IN   + V+G  G++ RNF H  +           +  + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ V+AHFP+   +    K + I NFLGE+  R+ +++ G  V  S K +D + + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:    8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKITI------SNDEENVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKVQG--KIVTIDNFLGERSPRKAKII-GDDVKVSVKGED-VTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METJA9.099e-2437.2250S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_METTH3.458e-2337.5050S ribosomal protein L6P OS=Methanobacterium ther... [more]
RL6_METMA5.898e-2335.3650S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_METS31.314e-2237.2250S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METHJ1.314e-2234.6650S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METVS1.453e-2134.2450S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA1.453e-2134.2450S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_HALMA5.520e-2135.3950S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_METAC7.210e-2134.2550S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_METST9.416e-2134.2550S ribosomal protein L6P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bp
GGGGGAGGGTTTAGGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTT
TCATCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGG
GTGAAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGG
TAAGCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGA
CTGATGGGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGG
TCTCGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAA
CCTCATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCC
ACGCTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATT
GAGATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCT
TGACGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTC
TTGATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAAT
CAGAAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGAT
CTATGTCAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGCTAGCTTTCA
AATTTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTT
TGCCCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTA
GAGGGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTA
TCAAATGGATTTTATACCTATTTGCCTGCAAAAAAAAAAAAAAAAAAAA
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