CB611035

Overview
NameCB611035
Unique NameCB611035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 62/181 (34.25%), Postives = 104/181 (57.46%), Query Frame = 2
Query:   77 ETMEIPEGVKVK-INAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            E +EIPE V ++ IN + + V+    +L R   + ++        +    K+ +++ +  +K +A I T  SH++N+ITGV++G+ YKM+  +AHFP+  S+      + I NFLGEK  R+  +++GV V  S    +++I+ G D E   ++AA I Q   V+ +D R F DGIY+ EK
Sbjct:    9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDVVI------KKEDNKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKG--NEVIIDNFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEK 178          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 63/184 (34.24%), Postives = 99/184 (53.80%), Query Frame = 2
Query:   68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            ++   +EIPE V  +++   + VEGP G ++R   + ++   +  D +     ++ D      KTSA + T  SHV N+I GVT G+ Y+M   +AHFP+  S+   +  IE  NFLGEK  RR  +     V    ++  E++ L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDET--DAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 58/178 (32.58%), Postives = 97/178 (54.49%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            +EIP+ V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   ++HFP+   +    + + I+NFLGEK  RR ++     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEG--EEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            + IPEGV V     ++   GP+G  +R   +  ++       E    ++ +D+    +K  A + T  SH+ N++ GV  G+ Y M+ V++HFP+   +    K   I NFLGEKK R   +L   +V  S    DE+I+ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKVNG--KKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 63/206 (30.58%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   23 LSRSRGRAAFIMKT---ILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            +  +RG   F + T   +     +E+PE V++ I         ++  GP+G+ +R  K+  +        E G  K+++      +K  A + T   H++NLITGV +G+ Y ++ V+AHFPI   +   +  IE  NF+GEK  RR +++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY+ +K
Sbjct:    1 MRENRGWEVFSLLTSTEVYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 61/177 (34.46%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 613
            +EIP+ V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   ++HFP+  S+   D  I I NFLGEK  R+  +    +V   +   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 61/179 (34.08%), Postives = 98/179 (54.75%), Query Frame = 2
Query:   83 MEIPEGVKVKINAK-IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            +EIPEG+ V  +   +    GP G + R   +  +  ++  DGE     +++DA    ++  A + T  SH++NL+ GV +G+  KM  ++AHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 54/181 (29.83%), Postives = 95/181 (52.49%), Query Frame = 2
Query:   89 IPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKK--VRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEK 616
            IPE VKV     I++V GP+G++ R F      +H +        K+ ++ +F +R+    I T  SH++N++ GV   + Y+++  + HFP+   +      + + NFLGEK   ++ +  LD V V +  +K + E++++  D E     A++I Q      K KD R+F DGI++  K
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEG--NKLIVENFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYK 184          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 54/189 (28.57%), Postives = 108/189 (57.14%), Query Frame = 2
Query:   65 ILSSETMEIPEGVKVKINAKI-----IEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616
            I+  E ++I + V+++I+ +      + V+GP+G++++ F +   D +L  + +    ++ I A   +R+  A +    ++++N+  GVT+G+ YK++ V++HFP    +   +  + I NF+GE   R  E++D        + +D +I+ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 55/182 (30.22%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   74 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 619
            + +++IP+G KV I+   + +      +S+NF   N    L+ DG T    +KI+A   +      + T  S + N+I G+  G++Y+M+  ++HFP+  S+    K++ I NF GE+  R  E++   TV       D + + G   + V  +AA I +   +K  D R F DGIY+  KG
Sbjct:    7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGDTTVTVKG---DRVYIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISKG 177          
The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_META31.606e-2034.2550S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_HALWD1.606e-2034.2450S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_HALSA2.740e-2032.5850S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_METBU6.104e-2033.7150S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_ARCFU1.360e-1930.5850S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_NATPD3.956e-1934.4650S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_METBF1.503e-1834.0850S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_NANEQ4.374e-1829.8350S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_METKA1.662e-1728.5750S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_THEAC1.191e-1530.2250S ribosomal protein L6P OS=Thermoplasma acidophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bp
GGGGGAGGGTTTAGGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTT
TCATCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGG
GTGAAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGG
TAAGCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGA
CTGATGGGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGG
TCTCGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAA
CCTCATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCC
ACGCTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATT
GAGATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCT
TGACGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTC
TTGATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAAT
CAGAAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGAT
CTATGTCAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGCTAGCTTTCA
AATTTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTT
TGCCCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTA
GAGGGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTA
TCAAATGGATTTTATACCTATTTGCCTGCAAAAAAAAAAAAAAAAAAAA
back to top