CB611035
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20 Identity = 62/181 (34.25%), Postives = 104/181 (57.46%), Query Frame = 2 Query: 77 ETMEIPEGVKVK-INAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 E +EIPE V ++ IN + + V+ +L R + ++ + K+ +++ + +K +A I T SH++N+ITGV++G+ YKM+ +AHFP+ S+ + I NFLGEK R+ +++GV V S +++I+ G D E ++AA I Q V+ +D R F DGIY+ EK Sbjct: 9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDVVI------KKEDNKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKG--NEVIIDNFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEK 178
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20 Identity = 63/184 (34.24%), Postives = 99/184 (53.80%), Query Frame = 2 Query: 68 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 ++ +EIPE V +++ + VEGP G ++R + ++ + D + ++ D KTSA + T SHV N+I GVT G+ Y+M +AHFP+ S+ + IE NFLGEK RR + V ++ E++ L G E V ++AA I Q V +KD R F DG+Y+++K Sbjct: 1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDET--DAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20 Identity = 58/178 (32.58%), Postives = 97/178 (54.49%), Query Frame = 2 Query: 83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 +EIP+ V +++ + VEGP G ++R + ++D + D + + + KT + + T SHV N+ GV++G+ YK+ ++HFP+ + + + I+NFLGEK RR ++ V+ D +E+ L G IE V ++AA I Q V +KD R F DG+Y+ EK Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEG--EEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20 Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 2 Query: 83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 + IPEGV V ++ GP+G +R + ++ E ++ +D+ +K A + T SH+ N++ GV G+ Y M+ V++HFP+ + K I NFLGEKK R +L +V S DE+I+ G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKVNG--KKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19 Identity = 63/206 (30.58%), Postives = 106/206 (51.46%), Query Frame = 2 Query: 23 LSRSRGRAAFIMKT---ILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 + +RG F + T + +E+PE V++ I ++ GP+G+ +R K+ + E G K+++ +K A + T H++NLITGV +G+ Y ++ V+AHFPI + + IE NF+GEK RR +++ V S + ++ + G DIE ++AA + Q +K KD R F DGIY+ +K Sbjct: 1 MRENRGWEVFSLLTSTEVYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 61/177 (34.46%), Postives = 95/177 (53.67%), Query Frame = 2 Query: 83 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 613 +EIP+ V ++ + VEGP G ++R + ++ D E G ++ D + KT + + T SHV N+ GVT+G+ Y M ++HFP+ S+ D I I NFLGEK R+ + +V + +EL + G IE V ++AA I Q V +KD R F DG+Y++E Sbjct: 5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18 Identity = 61/179 (34.08%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 83 MEIPEGVKVKINAK-IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 +EIPEG+ V + + GP G + R + + ++ DGE +++DA ++ A + T SH++NL+ GV +G+ KM ++AHFP+ + K++ I NFLGEKK R ++L V S +E+ + G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18 Identity = 54/181 (29.83%), Postives = 95/181 (52.49%), Query Frame = 2 Query: 89 IPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKK--VRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEK 616 IPE VKV I++V GP+G++ R F +H + K+ ++ +F +R+ I T SH++N++ GV + Y+++ + HFP+ + + + NFLGEK ++ + LD V V + +K + E++++ D E A++I Q K KD R+F DGI++ K Sbjct: 12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEG--NKLIVENFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYK 184
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17 Identity = 54/189 (28.57%), Postives = 108/189 (57.14%), Query Frame = 2 Query: 65 ILSSETMEIPEGVKVKINAKI-----IEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 616 I+ E ++I + V+++I+ + + V+GP+G++++ F + D +L + + ++ I A +R+ A + ++++N+ GVT+G+ YK++ V++HFP + + + I NF+GE R E++D + +D +I+ G D E V ++AA + Q ++K++D R F DGIY+ EK Sbjct: 17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15 Identity = 55/182 (30.22%), Postives = 93/182 (51.10%), Query Frame = 2 Query: 74 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 619 + +++IP+G KV I+ + + +S+NF N L+ DG T +KI+A + + T S + N+I G+ G++Y+M+ ++HFP+ S+ K++ I NF GE+ R E++ TV D + + G + V +AA I + +K D R F DGIY+ KG Sbjct: 7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGDTTVTVKG---DRVYIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISKG 177 The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bpback to top |