CB611038

Overview
NameCB611038
Unique NameCB611038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:1..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLTE (30S ribosomal protein S9 OS=Chlorobium tepidum GN=rpsI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 54/140 (38.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KT+VA  +   G+G I +N  P+E   + E  R +A +P+ +  +   N  D+ I VKGGG T Q  A+  +IA+ALV F     DE  +  +     R DR LL  DPR  E KK+G + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLAVAEKQ--NDFDITINVKGGGLTGQSGAVSLAIARALVEF-----DESIRAAL-----RPDR-LLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_METI4 (30S ribosomal protein S9 OS=Methylacidiphilum infernorum (isolate V4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   77 TAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEIL-RFKAFEPI-LLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            T  P+   +Q  GR+KTA A    K G+G + ING  +E   P  + R++ F+P+ ++ G  +F   D+  + +GGG   Q  A++ ++++AL+ +   Y     K+            LL  DPR  E KK G  GAR RFQ S R
Sbjct:    4 TVIPQNSPIQATGRRKTATATVILKPGKGEVSINGKDLEFYFPTFVHRYEVFKPLEVIEGTKKF---DIIAKARGGGLMGQAQALKLAVSRALIKYDPSYRSLLKKE-----------GLLTRDPRMKERKKTGQPGARKRFQFSKR 136          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_PELLD (30S ribosomal protein S9 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KT+VA  +   G+G + IN  P+E     E+ R  A  P++L    +    D+++ VKGGG + Q  A+   IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMTPGKGRVIINKLPVEEYFRDEVKRLHALRPLVLT--EKTEDFDIKVNVKGGGLSGQSGAVSLGIARALTEF-----DEAARAVLKQ------ERLLTRDPRMVERKKFGRKKARKSFQFSKR 129          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_SYNFM (30S ribosomal protein S9 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  113 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            G++KTAVA  + K G G + IN   IE  ++ E  +   ++P++L G   F  +D+ + V GGG + Q  AIR  I+KAL+ F           E +++L R     L  D R  E KK+G R ARARFQ S R
Sbjct:   10 GKRKTAVARVWLKPGSGSVTINKRTIEEYIDRETSKMVIYQPLVLTGT--FGKLDVTVNVLGGGGSGQAGAIRHGISKALLEF---------NPEFREVLKR--AGFLTRDSRVKERKKYGRRSARARFQYSKR 130          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLPD (30S ribosomal protein S9 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KT+VA  +   G+G + IN  P E     E+ R +A  P+ L    +    D+++ V GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGRVIINKLPAEEYFRDEVKRQQALRPLALT--EKMEDFDIKVNVHGGGVSGQTGAVSLAIARALTEF-----DESARAVLKK------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_PELPB (30S ribosomal protein S9 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KT+VA  +   G+G + +N  PIE   + E  R +A  P+++    R    D++I V+GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARAFMIPGKGRVIVNKLPIEEYFKDEFKRQQALRPLVIT--ERAEEFDIKINVQGGGVSGQSGAVSLAIARALTEF-----DETARVILKT------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLP8 (30S ribosomal protein S9 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KT+VA  +   G+G I +N  P+E   + E  R +A +P++   +   +  D+++ VKGGG T Q  A+  +IA+ALV F     DE  +  ++         LL  DPR  E KK+G + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLVTAEKQ--DEFDIKVNVKGGGLTGQSGAVCLAIARALVEF-----DESIRPTLR------TERLLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLCH (30S ribosomal protein S9 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KT+VA  +   G+G + +N  P+E   + E  R +A  P+ L    +    D++I V+GGG + Q  A+  +IA+AL          +S + ++ +L R +R LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARAFLTPGKGTVTVNKRPVEEYFKDEFKRQQALRPLTLC--EKAEEFDVKINVQGGGLSGQSGAVSLAIARALT---------ESDEALRAVL-RTER-LLTRDPRMVERKKFGRKKARKRFQFSKR 129          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_GRAFK (30S ribosomal protein S9 OS=Gramella forsetii (strain KT0803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 2
Query:   95 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            E +   GR+KTAVA  Y   G+G I +N   + +      L +K  +P++L         D++I V GGG T Q  AIR ++++A+VA     +DE++   +K         LL  DPR  E KK+G + AR +FQ S R
Sbjct:    2 EVIHKIGRRKTAVARVYVSEGKGNITVNKKDLKDYFTTGTLLYKVNQPMMLTENE--GNFDVKINVYGGGITGQAEAIRLALSRAMVA-----LDEENHGALK------PEGLLTRDPRMVERKKYGQKKARKKFQFSKR 128          
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_PETMO (30S ribosomal protein S9 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  113 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVE----PEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            GR+KTAVA  + + G G IKING   + LVE     E+   +A +P+ +   +     D+ IRV GGG + Q  AIR  IA+AL+++     DE  +  +K         LL  DPR  E KK+G R AR R Q S R
Sbjct:   11 GRRKTAVARVHLRPGNGKIKINGKEYKSLVEYLRGNEVWEIEALKPLTVTSTN--GQFDLVIRVNGGGLSGQAGAIRLGIARALLSY-----DESFRPILK------KEGLLTRDPREVERKKYGLRKARKRAQFSKR 135          
The following BLAST results are available for this feature:
BLAST of CB611038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS9_CHLTE4.935e-1338.5730S ribosomal protein S9 OS=Chlorobium tepidum GN=... [more]
RS9_METI48.418e-1333.3330S ribosomal protein S9 OS=Methylacidiphilum infe... [more]
RS9_PELLD1.099e-1235.7130S ribosomal protein S9 OS=Pelodictyon luteolum (... [more]
RS9_SYNFM1.436e-1238.0630S ribosomal protein S9 OS=Syntrophobacter fumaro... [more]
RS9_CHLPD1.875e-1235.7130S ribosomal protein S9 OS=Chlorobium phaeobacter... [more]
RS9_PELPB3.199e-1236.4330S ribosomal protein S9 OS=Pelodictyon phaeoclath... [more]
RS9_CHLP84.178e-1235.0030S ribosomal protein S9 OS=Chlorobaculum parvum (... [more]
RS9_CHLCH1.588e-1135.7130S ribosomal protein S9 OS=Chlorobium chlorochrom... [more]
RS9_GRAFK2.073e-1135.0030S ribosomal protein S9 OS=Gramella forsetii (str... [more]
RS9_PETMO4.619e-1139.1330S ribosomal protein S9 OS=Petrotoga mobilis (str... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_G12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611038 ID=CB611038; Name=CB611038; organism=Citrus sinensis; type=EST; length=591bp
GGGGAGGGTTTCAACTCTCTAGCACCAAGGGCTCACNCAACACAAACACA
CACTAAGCACTGATCCCAACATGGCTACTGCTGCTCCTAAAACCGAGTCC
GTGCAATGCTTCGGCCGCAAGAAGACGGCGGTGGCAGTAACCTACTGCAA
GCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGG
AGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGA
CGACACCGTTTCAACGGAGTAGACATGAGGATCCGCGTCAAGGGCGGAGG
CCACACATCTCAGATCTACGCTATACGCCAGAGCATCGCCAAGGCCTTGG
TCGCGTTTTATCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATAAAA
GACATTCTGGTTAGGTACGATAGGACTTTGCTTGTGGCTGATCCTAGACG
CTGTGAGCCTAAGAAGTTCGGAGGACGCGGCGCCAGGGCTAGGTTCCAGA
AATCTTACCGTTGAAGAAACAGAGGTTTATGTTGCGTTTTTATTATTGTT
ATTAATTTTGGGTTTTATTGAAGGATTAATTAATATGTTTT
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