CB611038

Overview
NameCB611038
Unique NameCB611038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:1..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLTB (30S ribosomal protein S9 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 2 
Query:  113 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG    N  D+ IRV GGG   Q+ A R  +A+A++         Q K++IK  L    +  L  DPR+ E KK+G + AR  FQ S R
Sbjct:    9 GRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGD--VNSFDLIIRVSGGGVQGQVIATRLGLARAVL---------QEKEDIKQELKA--QGFLTRDPRKKERKKYGRKKARKSFQFSKR 129
[Close]
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLT2 (30S ribosomal protein S9 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 2 
Query:  113 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG    N  D+ IRV GGG   Q+ A R  +A+A++         Q K++IK  L    +  L  DPR+ E KK+G + AR  FQ S R
Sbjct:    9 GRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGD--VNSFDLIIRVSGGGVQGQVIATRLGLARAVL---------QEKEDIKQELKA--QGFLTRDPRKKERKKYGRKKARKSFQFSKR 129
[Close]
BLAST of CB611038 vs. ExPASy Swiss-Prot
Match: RS9_CHLAB (30S ribosomal protein S9 OS=Chlamydophila abortus GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 2 
Query:  113 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 511
            GR+K AV+    + G G I +NG   +   P EI R     P+ +LG    N  D+ IR+ GGG   Q+ A R  +A+AL+   +K VD  SK+E+K          L  DPR+ E KK+G + AR  FQ S R
Sbjct:   13 GRRKQAVSSVRLRPGTGKIDVNGKAFDEYFPLEIQRVTILSPLKVLGYS--NDFDLVIRINGGGIQGQVIATRLGLARALL---KKNVD--SKQELK------SHGFLTRDPRKKERKKYGHKKARKSFQFSKR 133
The following BLAST results are available for this feature:
BLAST of CB611038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS9_CHLTB6.033e-1136.5730S ribosomal protein S9 OS=Chlamydia trachomatis ... [more]
RS9_CHLT26.033e-1136.5730S ribosomal protein S9 OS=Chlamydia trachomatis ... [more]
RS9_CHLAB7.879e-1138.0630S ribosomal protein S9 OS=Chlamydophila abortus ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_G12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611038 ID=CB611038; Name=CB611038; organism=Citrus sinensis; type=EST; length=591bp
GGGGAGGGTTTCAACTCTCTAGCACCAAGGGCTCACNCAACACAAACACA
CACTAAGCACTGATCCCAACATGGCTACTGCTGCTCCTAAAACCGAGTCC
GTGCAATGCTTCGGCCGCAAGAAGACGGCGGTGGCAGTAACCTACTGCAA
GCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGG
AGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGA
CGACACCGTTTCAACGGAGTAGACATGAGGATCCGCGTCAAGGGCGGAGG
CCACACATCTCAGATCTACGCTATACGCCAGAGCATCGCCAAGGCCTTGG
TCGCGTTTTATCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATAAAA
GACATTCTGGTTAGGTACGATAGGACTTTGCTTGTGGCTGATCCTAGACG
CTGTGAGCCTAAGAAGTTCGGAGGACGCGGCGCCAGGGCTAGGTTCCAGA
AATCTTACCGTTGAAGAAACAGAGGTTTATGTTGCGTTTTTATTATTGTT
ATTAATTTTGGGTTTTATTGAAGGATTAATTAATATGTTTT
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