CB611040

Overview
NameCB611040
Unique NameCB611040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig421 contig Csv1_Contig421:1..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.240e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:  193 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +SRS+RAGLQFPVGRIHR LK RTT+ GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 84
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.554e-24
Identity = 62/95 (65.26%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:  103 LAGKMSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +AG   GKG KG   G             P SRS +AGLQFPVGRIHR LK R +A  RVGATAAVY+AAILEYLTAEVLELAGNASKD KV+RI
Sbjct:    1 MAGGKGGKGGKG---GKGGKVGGAKNKKTPQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRI 92
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            ++S+RAGLQFPVGRIHR LKSRT  H R+GA AAVY++AILEYLTAEVLELAGNASKD+++KRI
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRI 88
The following BLAST results are available for this feature:
BLAST of CB611040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AV_RABIT1.660e-2692.31Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AV_PAGMA1.660e-2692.31Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3[more]
H2AV_MOUSE1.660e-2692.31Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3[more]
H2AV_HUMAN1.660e-2692.31Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DANRE1.660e-2692.31Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK1.660e-2692.31Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN1.660e-2692.31Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AV_CAEEL8.240e-2690.77Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AV_TETTH1.554e-2465.26Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_USTMA2.743e-2178.13Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611040 ID=CB611040; Name=CB611040; organism=Citrus sinensis; type=EST; length=387bp
GGGGGTGTCTTGAGTTTGGTGTTTTGTTCTTTGGCTTTGAAACCTCACCC
GTCTTTCTTCATCTTTGCGGAATCTGTCTCTGTCTCGAAATCTGTTAAAT
TATTGGCGGGAAAGATGTCGGGAAAAGGCGCGAAAGGTTTGATCATGGGA
AAGGCCTCGGCTAGTAACAAGGACAAGGACAAGAAGAAACCCATTTCCCG
CTCTTCCCGTGCTGGCCTTCAGTTCCCGGTTGGTCGGATTCACCGTCTTT
TGAAGTCAAGAACCACAGCACATGGAAGAGTAGGAGCGACTGCTGCTGTG
TACTCTGCTGCCATCTTGGAATATTTGACTGCAGAGGTGTTGGAGCTGGC
TGGAAATGCAAGCAAAGATCTTAAGGTGAAGCGTATA
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