CB611040

Overview
NameCB611040
Unique NameCB611040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig421 contig Csv1_Contig421:1..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRS++AG+ FPVGR+ R +K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRV 76
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AY_HUMAN (Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRS++AG+ FPVGR+ R +K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRV 76
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AY_CHICK (Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRS++AG+ FPVGR+ R +K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRV 76
The following BLAST results are available for this feature:
BLAST of CB611040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AY_MOUSE1.155e-1156.25Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]
H2AY_HUMAN1.155e-1156.25Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY ... [more]
H2AY_CHICK1.155e-1156.25Core histone macro-H2A.1 OS=Gallus gallus GN=H2AFY... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611040 ID=CB611040; Name=CB611040; organism=Citrus sinensis; type=EST; length=387bp
GGGGGTGTCTTGAGTTTGGTGTTTTGTTCTTTGGCTTTGAAACCTCACCC
GTCTTTCTTCATCTTTGCGGAATCTGTCTCTGTCTCGAAATCTGTTAAAT
TATTGGCGGGAAAGATGTCGGGAAAAGGCGCGAAAGGTTTGATCATGGGA
AAGGCCTCGGCTAGTAACAAGGACAAGGACAAGAAGAAACCCATTTCCCG
CTCTTCCCGTGCTGGCCTTCAGTTCCCGGTTGGTCGGATTCACCGTCTTT
TGAAGTCAAGAACCACAGCACATGGAAGAGTAGGAGCGACTGCTGCTGTG
TACTCTGCTGCCATCTTGGAATATTTGACTGCAGAGGTGTTGGAGCTGGC
TGGAAATGCAAGCAAAGATCTTAAGGTGAAGCGTATA
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