CB611040

Overview
NameCB611040
Unique NameCB611040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig421 contig Csv1_Contig421:1..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_COCIM (Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GRI R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRIKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   24 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 87
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_EMENI (Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPOR (Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPNC (Histone H2A.Z OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPFU (Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPCL (Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S+RAGLQFPVGR+ R LK +     RVG+ AA+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   23 SHSARAGLQFPVGRVKRYLKKQAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 86
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            +RSSRAGLQFPVGR+HRLL+    AH RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 79
The following BLAST results are available for this feature:
BLAST of CB611040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AZ_COCIM4.842e-1873.44Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3... [more]
H2AZ_NEOFI6.324e-1871.88Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]
H2AZ_MONAN6.324e-1871.88Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1[more]
H2AZ_EMENI6.324e-1871.88Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 ... [more]
H2AZ_ASPOR6.324e-1871.88Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 S... [more]
H2AZ_ASPNC6.324e-1871.88Histone H2A.Z OS=Aspergillus niger (strain CBS 513... [more]
H2AZ_ASPFU6.324e-1871.88Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=... [more]
H2AZ_ASPCL6.324e-1871.88Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3... [more]
H2AZ_LODEL1.409e-1770.31Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AX_XENLA1.840e-1771.88Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611040 ID=CB611040; Name=CB611040; organism=Citrus sinensis; type=EST; length=387bp
GGGGGTGTCTTGAGTTTGGTGTTTTGTTCTTTGGCTTTGAAACCTCACCC
GTCTTTCTTCATCTTTGCGGAATCTGTCTCTGTCTCGAAATCTGTTAAAT
TATTGGCGGGAAAGATGTCGGGAAAAGGCGCGAAAGGTTTGATCATGGGA
AAGGCCTCGGCTAGTAACAAGGACAAGGACAAGAAGAAACCCATTTCCCG
CTCTTCCCGTGCTGGCCTTCAGTTCCCGGTTGGTCGGATTCACCGTCTTT
TGAAGTCAAGAACCACAGCACATGGAAGAGTAGGAGCGACTGCTGCTGTG
TACTCTGCTGCCATCTTGGAATATTTGACTGCAGAGGTGTTGGAGCTGGC
TGGAAATGCAAGCAAAGATCTTAAGGTGAAGCGTATA
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