CB611040

Overview
NameCB611040
Unique NameCB611040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig421 contig Csv1_Contig421:1..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_CANAL (Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S+RAGLQFPVGR+ R LK       RVG+ AA+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   23 SHSARAGLQFPVGRVKRYLKRNAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 86          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGRIHRLL+    A GRVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYA-GRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 78          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  115 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            MSGKG  G   G              +SRSS+AGLQFPVGR+HRLLK    A  RVGA A VY AA+LEYL AE+LELAGNA++D K +RI
Sbjct:    1 MSGKGKAGKSGGKAGSETKS------MSRSSKAGLQFPVGRVHRLLKKGNYAQ-RVGAGAPVYMAAVLEYLAAEILELAGNAARDNKKQRI 84          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_PICGU (Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S+RAGLQFPVGRI R LK       RVG+ +A+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRSAQNKVRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 86          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGRIHRLL+    A  R+GA A VY AA+LEYLTAE+LELAGNAS+D K  RI
Sbjct:   17 SRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRI 79          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S+RAGLQFPVGRI R LK       RVG+ +A+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 86          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S+RAGLQFPVGRI R LK       RVG+ +A+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 86          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            S S++AGLQFP G + R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  115 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            MSG+G  G + G               SRSSRAGLQFPVGRIHRLL+    A  RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKVKGKSK------------SRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79          
The following BLAST results are available for this feature:
BLAST of CB611040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AZ_CANAL2.403e-1770.31Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=... [more]
H2A_MYTTR3.139e-1775.00Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A_AGABI4.099e-1757.14Histone H2A OS=Agaricus bisporus PE=2 SV=3[more]
H2AZ_PICGU4.099e-1770.31Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=... [more]
H2A1A_HUMAN4.099e-1773.44Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2AZ_PICST5.354e-1770.31Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_DEBHA5.354e-1770.31Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_ASPTN5.354e-1770.31Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2A_LITVA6.992e-1757.14Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2AJ_CHICK6.992e-1771.88Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611040 ID=CB611040; Name=CB611040; organism=Citrus sinensis; type=EST; length=387bp
GGGGGTGTCTTGAGTTTGGTGTTTTGTTCTTTGGCTTTGAAACCTCACCC
GTCTTTCTTCATCTTTGCGGAATCTGTCTCTGTCTCGAAATCTGTTAAAT
TATTGGCGGGAAAGATGTCGGGAAAAGGCGCGAAAGGTTTGATCATGGGA
AAGGCCTCGGCTAGTAACAAGGACAAGGACAAGAAGAAACCCATTTCCCG
CTCTTCCCGTGCTGGCCTTCAGTTCCCGGTTGGTCGGATTCACCGTCTTT
TGAAGTCAAGAACCACAGCACATGGAAGAGTAGGAGCGACTGCTGCTGTG
TACTCTGCTGCCATCTTGGAATATTTGACTGCAGAGGTGTTGGAGCTGGC
TGGAAATGCAAGCAAAGATCTTAAGGTGAAGCGTATA
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