CB611040

Overview
NameCB611040
Unique NameCB611040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig421 contig Csv1_Contig421:1..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2C_MOUSE (Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
The following BLAST results are available for this feature:
BLAST of CB611040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A2C_MOUSE6.992e-1771.88Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac ... [more]
H2A2C_HUMAN6.992e-1771.88Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ... [more]
H2A2C_BOVIN6.992e-1771.88Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE... [more]
H2A2B_MOUSE6.992e-1771.88Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2A_RAT6.992e-1771.88Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2... [more]
H2A2A_MOUSE6.992e-1771.88Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1... [more]
H2A2A_HUMAN6.992e-1771.88Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3... [more]
H2A_CAIMO9.132e-1771.88Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AJ_RAT9.132e-1771.88Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE9.132e-1771.88Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611040 ID=CB611040; Name=CB611040; organism=Citrus sinensis; type=EST; length=387bp
GGGGGTGTCTTGAGTTTGGTGTTTTGTTCTTTGGCTTTGAAACCTCACCC
GTCTTTCTTCATCTTTGCGGAATCTGTCTCTGTCTCGAAATCTGTTAAAT
TATTGGCGGGAAAGATGTCGGGAAAAGGCGCGAAAGGTTTGATCATGGGA
AAGGCCTCGGCTAGTAACAAGGACAAGGACAAGAAGAAACCCATTTCCCG
CTCTTCCCGTGCTGGCCTTCAGTTCCCGGTTGGTCGGATTCACCGTCTTT
TGAAGTCAAGAACCACAGCACATGGAAGAGTAGGAGCGACTGCTGCTGTG
TACTCTGCTGCCATCTTGGAATATTTGACTGCAGAGGTGTTGGAGCTGGC
TGGAAATGCAAGCAAAGATCTTAAGGTGAAGCGTATA
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