CB611040

Overview
NameCB611040
Unique NameCB611040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig421 contig Csv1_Contig421:1..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:  115 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            MSG+G  G + G               +RSSRAGLQFPVGRIHRLL+    A  RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKVKGKSK------------TRSSRAGLQFPVGRIHRLLRKGNYAQ-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRI 78
[Close]
BLAST of CB611040 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  196 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 387
            SRSSRAGLQFPVGRIHRLL+    A  RVGA A VY AA+LEYL+AE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRI 78
The following BLAST results are available for this feature:
BLAST of CB611040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AJ_MACFA9.132e-1771.88Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN9.132e-1771.88Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_BOVIN9.132e-1771.88Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]
H2A4_CHICK9.132e-1771.88Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A2B_HUMAN9.132e-1771.88Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1_RAT9.132e-1771.88Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A1C_RAT9.132e-1771.88Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN9.132e-1771.88Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2A_SEPOF1.193e-1656.04Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2A_ACRFO1.193e-1671.88Histone H2A OS=Acropora formosa PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611040 ID=CB611040; Name=CB611040; organism=Citrus sinensis; type=EST; length=387bp
GGGGGTGTCTTGAGTTTGGTGTTTTGTTCTTTGGCTTTGAAACCTCACCC
GTCTTTCTTCATCTTTGCGGAATCTGTCTCTGTCTCGAAATCTGTTAAAT
TATTGGCGGGAAAGATGTCGGGAAAAGGCGCGAAAGGTTTGATCATGGGA
AAGGCCTCGGCTAGTAACAAGGACAAGGACAAGAAGAAACCCATTTCCCG
CTCTTCCCGTGCTGGCCTTCAGTTCCCGGTTGGTCGGATTCACCGTCTTT
TGAAGTCAAGAACCACAGCACATGGAAGAGTAGGAGCGACTGCTGCTGTG
TACTCTGCTGCCATCTTGGAATATTTGACTGCAGAGGTGTTGGAGCTGGC
TGGAAATGCAAGCAAAGATCTTAAGGTGAAGCGTATA
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