CB611042

Overview
NameCB611042
Unique NameCB611042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:1..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL+  GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL+  GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL+  GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV  G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV  G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV  G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 51/89 (57.30%), Postives = 72/89 (80.90%), Query Frame = 1
Query:  307 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL+  G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 1
Query:  325 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  298 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            D    +  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++    ++K++IK+HGF
Sbjct:   17 DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CB611042 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 1
Query:  325 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVRAGIVKKEHIKMHGF 573
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
The following BLAST results are available for this feature:
BLAST of CB611042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE1.901e-2860.67Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA1.901e-2860.67Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN1.901e-2860.67Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB2.102e-2758.43Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN2.102e-2758.43Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN2.102e-2758.43Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE2.745e-2757.30Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_ANOGA3.356e-2560.24Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_YEAST5.724e-2554.35Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_DROME5.724e-2559.04Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_H05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611042 ID=CB611042; Name=CB611042; organism=Citrus sinensis; type=EST; length=682bp
GGGGAACCTAAGCCTGAAAAACGAACTTTGTTTGTAATTTACATATTTGC
TTCCTTTTTTCTGGATATTTCTCCCTAACTCTCTGTCACCAAGAACGAGC
TTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATCTTATCAGAT
CGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGTCTGAGCATT
CCGGTTGTTGGGCCCCTTGCATCAGCTGAGGTTCATGTCTGATTTTGATA
TCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAGGCTGAGGAC
TCAGGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCAGCAACGGAA
TGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAGAATTTAGTT
ACAACAAAATCCTCAAGGACCTCAAAAAGGAATTTTGCTGCAATGGAACA
GTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCAAGGTGACCA
GCGGAAGAATGTATCTACGTTCCTTGTTCGGGCTGGGATTGTGAAGAAGG
AACATATCAAAATGCATGGCTTTTAAGTAAACAGCAACTTCCGTTTCTGC
ACATTTGGTGACCCGCGTTCGTCAGTGCAGTGCAGAACATGCTATTGATA
CTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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