CB611048

Overview
NameCB611048
Unique NameCB611048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10932 contig Csv1_Contig10932:36..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611048 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:   57 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 287
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of CB611048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO3.805e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611048 ID=CB611048; Name=CB611048; organism=Citrus sinensis; type=EST; length=524bp
GGGGGCTTTGCTTTCTTCCTTGCTTTTCCTCTGAAACGATCCGCTAAGCT
TCGACAATGAGCAGATCAGGCCAGCCTCCGGATCTCAAGAAGTACATGGA
TAAGAAGCTTCAGATCAAGCTCAATGCTAATAGGATGATTGTTGGAACAC
TTCGTGGATTTGATCAGTTTATGAATCTTGTGATTGACAACACAGTTGAG
GTCAATGGCAATGAGAAAAATGATATAGGGATGGTGGTTATCAGAGGGAA
TAGTGTAGTCACTGTTGAAGCCCTTGAACCTGTAAGCAAATCACAGTGAC
GTGGTTTGCCACTGGGGTCGATGTAATGTGCTTTCTGATCTTCGTTGTGT
ACTATTATGAATATTAAGGCTGTTAGTGTGCAATGGGAGATGTTTCATGC
TGTGGTACTGGTACCTGAGAAAATTAGGCCATTTTCTTTGTAATGCTTAT
TCTAAGGGAGCTCGTTTTGAACAGGTAATTAGAATTAATCATCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
back to top