CB611075

Overview
NameCB611075
Unique NameCB611075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYV_METJA (Valyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=valS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  215 RDRLLEIESKVHTWWEESNVFNA-EPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            +D  +EIE ++   WEES ++   E   +PP       +  + P PY  G LHLGHA +++ ++  A Y R+KG NVL P G+ C G+P +   +++
Sbjct:    5 KDYNIEIEKQIQKKWEESKIYKFDEESNKPP-------YIIDTPPPYPTGRLHLGHALNWTYMDIIARYKRMKGFNVLFPQGWDCHGLPTEVKVEEI 94          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_PYRKO (Leucyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=leuS PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            IE K    W E+ VF  +   +P      +KF+    FPY++G+LH+GHA +++  +  A + R++G NVL P G+H TG PI   A+++
Sbjct:    9 IEEKWQKRWMEARVFEPDRKAKPKE----KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMGWHITGAPIVGIAERI 94          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL1_SULSO (Leucyl-tRNA synthetase 1 OS=Sulfolobus solfataricus GN=leuS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 35/84 (41.67%), Postives = 44/84 (52.38%), Query Frame = 2
Query:  257 WEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 508
            WE+S VF        P      KFF   PFPY N  +H+GH  ++   +  A Y R+KG NVL PF F  TG P+ A AD + R
Sbjct:   17 WEKSKVFETNMDYSKP------KFFITVPFPYTNSPMHVGHGRTYITADIYARYLRMKGYNVLFPFAFQFTGTPVLAIADSIRR 94          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_PYRAB (Leucyl-tRNA synthetase OS=Pyrococcus abyssi GN=leuS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            IE K    W E+ VF     ++P      +KF+    FPY++G+LH+GHA +++  +  A + R++G NVL P G+H TG PI   A+++
Sbjct:    9 IEEKWQKRWLEAKVFEPNIKDKPKE----KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMGWHITGSPIVGIAERI 94          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_META3 (Leucyl-tRNA synthetase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=leuS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 2
Query:  227 LEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLARE 511
            ++I  K    WEE  +F      +    E  +KFF    FPY+NG LH GH  +F+  E  A Y R+    VL  FGFH +G PI   A+ L ++
Sbjct:    6 VKIAEKWQKRWEEDKIFENPSKLKYTEQEKKDKFFITAAFPYLNGVLHAGHLRTFTIPEITARYQRMNNKTVLWTFGFHVSGTPIIGLAELLKKQ 100          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYV_HALSA (Valyl-tRNA synthetase OS=Halobacterium salinarium GN=valS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            IE K    W+E +V+  +P E      S  ++  + P PY +G LHLGHA  +S ++F A Y RLKG  VL P G+ C G+P +   +++
Sbjct:   13 IEPKWQDEWQERDVYRFDPSE------SDTQYVIDTPPPYPSGNLHLGHALGWSYIDFVARYRRLKGDAVLFPQGWDCHGLPTEVKVEEV 96          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYV_HALS3 (Valyl-tRNA synthetase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=valS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            IE K    W+E +V+  +P E      S  ++  + P PY +G LHLGHA  +S ++F A Y RLKG  VL P G+ C G+P +   +++
Sbjct:   13 IEPKWQDEWQERDVYRFDPSE------SDTQYVIDTPPPYPSGNLHLGHALGWSYIDFVARYRRLKGDAVLFPQGWDCHGLPTEVKVEEV 96          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_THEON (Leucyl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=leuS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            IE K    W E  VF  +   +P      +KF+    FPY++G+LH+GHA +++  +  A + R++G NVL P  +H TG PI   A+++
Sbjct:    9 IEEKWQKRWMEDRVFEPDRNAKPKE----KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGAPIVGIAERI 94          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_IGNH4 (Leucyl-tRNA synthetase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=leuS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIK 517
            L EI +K    WE + +  A+     P      KF+    FPY N  +HLGH+ ++S  +  A + R++G NVL P GFH TG PI A ++K+ + ++
Sbjct:   12 LKEIAAKWREEWERARLHEADVDPNRP------KFYVTAAFPYPNSPMHLGHSRTYSVTDAYARFKRMRGFNVLFPMGFHYTGTPIIAMSEKVKQGLQ 103          
The following BLAST results are available for this feature:
BLAST of CB611075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SYV_METJA1.396e-1135.05Valyl-tRNA synthetase OS=Methanocaldococcus jannas... [more]
SYL_PYRKO2.381e-1136.67Leucyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]
SYL1_SULSO2.381e-1141.67Leucyl-tRNA synthetase 1 OS=Sulfolobus solfataricu... [more]
SYL_PYRAB3.109e-1136.67Leucyl-tRNA synthetase OS=Pyrococcus abyssi GN=leu... [more]
SYL_META33.109e-1136.84Leucyl-tRNA synthetase OS=Methanococcus aeolicus (... [more]
SYV_HALSA6.927e-1137.78Valyl-tRNA synthetase OS=Halobacterium salinarium ... [more]
SYV_HALS36.927e-1137.78Valyl-tRNA synthetase OS=Halobacterium salinarum (... [more]
SYL_THEON9.047e-1135.56Leucyl-tRNA synthetase OS=Thermococcus onnurineus ... [more]
SYL_IGNH49.047e-1135.71Leucyl-tRNA synthetase OS=Ignicoccus hospitalis (s... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611075 ID=CB611075; Name=CB611075; organism=Citrus sinensis; type=EST; length=631bp
GCGGGGGTTGATTGGAACCCGTAAACACAAACCAGATAACAGCATCTCAA
GATTCCCAAACCCTAGTATAAAAAGCTCTCTTTCGCTGGCTTTATCTCTA
CTGAGACAAAACGCCCCGTTTTTGCACCGCAATGCCCTTCGGTTTTCGGC
CCTGAATCACAGTTTTTCTCAGTTCCACGATATGGCAACAGAAAGTGGGA
AAAGCTTTGCGAGGAGAGATCGTCTCCTGGAGATTGAGTCAAAGGTCCAC
ACTTGGTGGGAGGAGAGTAATGTTTTCAATGCTGAACCTGGCGAAAGGCC
TCCGAATCCTGAAAGTGGGGAAAAGTTCTTTGGAAACTTTCCATTTCCTT
ATATGAATGGCTATTTGCATCTAGGGCATGCATTCTCATTTTCCAAGCTT
GAATTTGCTGCGGCGTATCATAGATTGAAAGGTGCTAATGTGCTTTTGCC
ATTTGGTTTCCACTGCACTGGTATGCCCATTAAGGCCTCAGCTGATAAGC
TTGCTAGGGAAATTAAGCAGTTTGGGAATCCACCTGTATTTCTCAAAGAA
GCGGAGGAGGAAGAAAGTCCACAGCCAGAAGAAGCTGAGGATGCAAATGG
AGGTGCTCCACCGGATAAGTTTAAGAGCAAG
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