CB611076

Overview
NameCB611076
Unique NameCB611076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.368e-26
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRIKECRSYPLY+ VRE LG+  LTGEKV SPGEE DKVFTAMC+G IIDP+LECL+ W+GA
Sbjct:  635 GNPAIPNRIKECRSYPLYKFVREGLGTELLTGEKVRSPGEECDKVFTAMCEGSIIDPLLECLKSWDGA 702          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.093e-25
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P + NRI ECRSYPLYRLVREELG+  LTGEKV SPGEE DKVFTA+C G+IIDP+LECL+ WNGA
Sbjct:  632 GNPLIRNRITECRSYPLYRLVREELGTELLTGEKVRSPGEEIDKVFTAICNGQIIDPLLECLKSWNGA 699          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.093e-25
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRI+ECRSYPLY+ VR+ELG+ +LTGEKVTSPGEEF+KVF AM +G+IIDP+LECL  WNGA
Sbjct:  644 GNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGA 711          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.864e-25
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            GS  +PNRI ECRSYPLY+ VREELG+ +LTGEKV SPGEE DKVFTA+C+GKIIDP+L+CL  WNGA
Sbjct:  645 GSAGVPNRITECRSYPLYKFVREELGAEYLTGEKVRSPGEECDKVFTAICEGKIIDPILDCLEGWNGA 712          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.435e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P + NRIKECRSYPLYR VR ELG+  LTGEKV SPGEE DKVFTAMC G+IID +LECL+EWNGA
Sbjct:  640 GNPAIANRIKECRSYPLYRFVRGELGAELLTGEKVRSPGEECDKVFTAMCNGQIIDSLLECLKEWNGA 707          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.435e-25
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G  ++PNRIKECRSYPLYR VREELG++ LTGEK+ SPGEE  KVF A+C GK++DP+LECL+EWNGA
Sbjct:  638 GKSEIPNRIKECRSYPLYRFVREELGTSLLTGEKIKSPGEECYKVFNAICAGKLVDPLLECLKEWNGA 705          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.180e-25
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PN+I  CRSYPLY+ VREELG+  LTGE V SPGEE DK+F+AMCQGKIIDP+LECL EWNGA
Sbjct:  653 GNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGA 720          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.180e-25
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            GSP + NRIK+CRSYPLY+ V+E +GS FLTGEKV SPGEEFDKVF A+C+GK IDPML+CL+EWNGA
Sbjct:  632 GSPAIENRIKDCRSYPLYKFVKE-VGSGFLTGEKVVSPGEEFDKVFNAICEGKAIDPMLDCLKEWNGA 698          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.153e-25
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  + N+IKECRSYPLY+ VREELG++ LTGEKV SPGEE DK+FTA+CQGKIIDP+LECL +WNGA
Sbjct:  652 GNTTISNKIKECRSYPLYKFVREELGTSLLTGEKVISPGEECDKLFTAICQGKIIDPLLECLGDWNGA 719          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.424e-25
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 203
            G+P  PNRIKECRSYPLY+ VREELG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  639 GNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
The following BLAST results are available for this feature:
BLAST of CB611076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL1_IPOBA8.368e-2675.00Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PAL1_SOLLC1.093e-2576.47Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL1_PETCR1.093e-2573.53Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PAL1_PRUAV1.864e-2575.00Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL2_TOBAC2.435e-2576.47Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_RUBID2.435e-2572.06Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PALY_MEDSA3.180e-2573.53Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PALY_BROFI3.180e-2575.00Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL2_PEA4.153e-2573.53Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL3_PHAVU5.424e-2574.63Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611076 ID=CB611076; Name=CB611076; organism=Citrus sinensis; type=EST; length=379bp
GGGGAAGTCCAGATCTTCCCAACAGGATCAAAGAATGCAGGTCTTACCCT
TTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAACAGGGGA
AAAAGTTACATCGCCCGGCGAGGAATTTGATAAAGTGTTTACAGCAATGT
GCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAAT
GGCGCCCCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACACG
GTCTTCAATCCCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTC
AGTGGTACGAATTCATCTGTAATATTTCAATCACTTCTATTGGTTTTTTT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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