CB611076

Overview
NameCB611076
Unique NameCB611076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.424e-25
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PN+I  CRSYPLYR VR+ELG+  LTGEKV SPGEE DK+FTA+CQGKIIDP+L+CL +WNGA
Sbjct:  651 GNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVISPGEECDKLFTAICQGKIIDPLLQCLGDWNGA 718          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.084e-25
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G P + NRI+ECRSYPLY+ VREELG+  LTGEKV SPGEE DKVFTAMC+GK++DP+L CL  WNGA
Sbjct:  638 GIPAISNRIEECRSYPLYKFVREELGTELLTGEKVRSPGEELDKVFTAMCEGKLVDPLLACLEAWNGA 705          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.252e-25
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRI ECRSYPLY+ VRE LG++ LTGEK+ SPGEE DKVF A+C G+ IDPML+CL+EWNGA
Sbjct:  646 GNPAVPNRIIECRSYPLYKFVRENLGTSLLTGEKIRSPGEECDKVFAALCDGRFIDPMLDCLKEWNGA 713          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.516e-24
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRI ECRSYPLY+ VREELG+  LTGEKV SPGE  DKVFTA+C G IIDP+LECL+ W+GA
Sbjct:  636 GNPAIPNRITECRSYPLYKFVREELGTEMLTGEKVKSPGEVCDKVFTAVCDGGIIDPLLECLKSWDGA 703          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.592e-24
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  +PNRI ECRSYPLY+ VREELG  +LTGEKV SPGEE DKVF A+CQGKIIDP+L CL  WNGA
Sbjct:  163 GNAAVPNRIAECRSYPLYKFVREELGGEYLTGEKVRSPGEECDKVFQAICQGKIIDPILGCLEGWNGA 230          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.833e-24
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G P + NRI ECRSYPLY+ +REELG+NFLTGEKV SPGEE D+VFTAM +G I+DP+L+CL  WNGA
Sbjct:  641 GKPAIANRITECRSYPLYKFIREELGTNFLTGEKVMSPGEECDRVFTAMSKGLIVDPLLKCLEGWNGA 708          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.023e-23
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  + N+I  CRSYPLY+ VREELG++ LTGE+V SPGEE DK+FTAMCQGKIIDP+L+CL EWNGA
Sbjct:  653 GNSTIANKINGCRSYPLYKFVREELGTSLLTGERVISPGEECDKLFTAMCQGKIIDPLLKCLGEWNGA 720          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.336e-23
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PN+I+ECRSYPLY+ VR ELG+  LTGEKV SPGEE D+VF A+C+GK++DP+L CL  WNGA
Sbjct:  633 GTPAIPNKIEECRSYPLYKFVRGELGTELLTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGA 700          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.279e-23
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  + NRIKECRSYPLYR VR+EL +  LTGE V SPGEEFDKVF A+  GK+IDP+LECL+EWNGA
Sbjct:  635 GTSAIANRIKECRSYPLYRFVRDELNTELLTGENVRSPGEEFDKVFLAISDGKLIDPLLECLKEWNGA 702          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.477e-22
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRI + RSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTA+C GK+IDP    L+EWNGA
Sbjct:  499 GNPAIPNRITDRRSYPLYKFVREELGTVLLTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGA 566          
The following BLAST results are available for this feature:
BLAST of CB611076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL1_PEA5.424e-2572.06Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL1_LITER7.084e-2572.06Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PAL2_CICAR9.252e-2570.59Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL2_IPOBA3.516e-2472.06Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PALY_MALDO4.592e-2473.53Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PALY_DIGLA7.833e-2470.59Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PALY_TRISU1.023e-2370.59Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PAL2_LITER1.336e-2366.18Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL4_ARATH2.279e-2370.59Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PAL4_POPKI1.477e-2270.59Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611076 ID=CB611076; Name=CB611076; organism=Citrus sinensis; type=EST; length=379bp
GGGGAAGTCCAGATCTTCCCAACAGGATCAAAGAATGCAGGTCTTACCCT
TTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAACAGGGGA
AAAAGTTACATCGCCCGGCGAGGAATTTGATAAAGTGTTTACAGCAATGT
GCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAAT
GGCGCCCCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACACG
GTCTTCAATCCCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTC
AGTGGTACGAATTCATCTGTAATATTTCAATCACTTCTATTGGTTTTTTT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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