CB611076

Overview
NameCB611076
Unique NameCB611076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.613e-22
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+ ++ NRIK+CRSYPLYR VR EL +  LTGE V SPGE+FDKVF A+ QGK+IDP+ ECL+EWNGA
Sbjct:  622 GTFNVANRIKKCRSYPLYRFVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGA 689          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.250e-21
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 203
            G+  +P+RI ECRSYPLYR VREELG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  641 GTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.250e-21
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 203
            G+  +P+RI ECRSYPLYR VREELG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  641 GTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.133e-21
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 203
            G+    NRI ECRSYPLYR VR+ELG+ +LTGEK  SPGEE DKVF AM QGK ID +LECL+EWNG
Sbjct:  628 GTAAQQNRIAECRSYPLYRFVRKELGTEYLTGEKTRSPGEEVDKVFVAMNQGKHIDALLECLKEWNG 694          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 203
            G+  + NRI E RS+PLYR VREELG  FLTGEK+ SPGEE +KVF  + QGK+IDPML+CL+EWNG
Sbjct:  629 GTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNG 695          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.597e-14
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 203
            G+  LP+RI+ECRSYPLY  VR +LG+  L+G +  SPGE  + V+ A+ + K+I P+ +CL  W G
Sbjct:  647 GTSPLPDRIQECRSYPLYEFVRNQLGTKLLSGTRTISPGEVIEVVYDAISEDKVIVPLFKCLDGWKG 713          
The following BLAST results are available for this feature:
BLAST of CB611076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL3_ARATH5.613e-2267.65Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL2_ORYSJ1.250e-2167.16Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI1.250e-2167.16Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_WHEAT2.133e-2170.15Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL1_ORYSJ1.806e-2067.16Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA9.597e-1447.76Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611076 ID=CB611076; Name=CB611076; organism=Citrus sinensis; type=EST; length=379bp
GGGGAAGTCCAGATCTTCCCAACAGGATCAAAGAATGCAGGTCTTACCCT
TTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAACAGGGGA
AAAAGTTACATCGCCCGGCGAGGAATTTGATAAAGTGTTTACAGCAATGT
GCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAAT
GGCGCCCCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACACG
GTCTTCAATCCCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTC
AGTGGTACGAATTCATCTGTAATATTTCAATCACTTCTATTGGTTTTTTT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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