CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.454e-48
Identity = 86/188 (45.74%), Postives = 111/188 (59.04%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSARE-ALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQP 663
            F     M +TL+ Y   +YG P   +  +E  L  S + EYLKLKAR E LQR+QRNLLGE+LG L   ELE LE+QLD+SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++             L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P
Sbjct:   57 FCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTP 231          

HSP 2 Score: 78.5666 bits (192), Expect = 1.454e-48
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKFC 134
            QVTFAKRRNGLLKKAYELSVLCDAEVALIIF+NRGKL +FC
Sbjct:   18 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFC 58          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.394e-42
Identity = 80/198 (40.40%), Postives = 108/198 (54.55%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNY 711
            F   S M KTL+ Y   +YG+ + +  ++E  E S Q EYLKLKA+ + LQRS RNLLGE+LG L++ ELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +                        L  S           QP GD FF    L C   LQIGY  A  D ++  T+  +++ +
Sbjct:   57 FCSTSCMNKTLERYQRCSYGSLETSQPSKET-ESSYQ-EYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK------------------------LEESCASFRPNWDVRQP-GDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGF 227          

HSP 2 Score: 78.1814 bits (191), Expect = 1.394e-42
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKFC 134
            QVTFAKRRNGLLKKAYELSVLCDAEVALI+F+NRGKL +FC
Sbjct:   18 QVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFC 58          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.393e-41
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 660
            F+  S M KTL+ Y + NY       SA    ELS  +EYLKLK R E LQ +QRNLLGE+L PL+  ELE LE Q++ SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:   57 FSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          

HSP 2 Score: 71.2478 bits (173), Expect = 7.393e-41
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTFAKRRNGLLKKAYELSVLCDAEVALIIF+ RG+L +F
Sbjct:   18 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.393e-41
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 660
            F+  S M KTL+ Y + NY       SA    ELS  +EYLKLK R E LQ +QRNLLGE+L PL+  ELE LE Q++ SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:   57 FSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          

HSP 2 Score: 71.2478 bits (173), Expect = 7.393e-41
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTFAKRRNGLLKKAYELSVLCDAEVALIIF+ RG+L +F
Sbjct:   18 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 9.612e-41
Identity = 72/196 (36.73%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  142 SRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPTLQI----GYQPADPISVVTAGPSLNNY 711
            S M +T+D Y   +Y    PN SA++  +    ++YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++   L  +D A  Q   G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +
Sbjct:   62 SGMARTVDKYRKHSYATMDPNQSAKDLQDK--YQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGF 252          

HSP 2 Score: 77.411 bits (189), Expect = 9.612e-41
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKFC 134
            QVTFAKRRNGLLKKAYELSVLCDAE+AL+IF+NRGKL +FC
Sbjct:   18 QVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFC 58          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.315e-36
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 1
Query:  154 KTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNY 711
            KTL+ Y++  Y A   N +       S  +E  +LK + E LQRSQR++LGE+LGPL+  EL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +      +      + + +   T+         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN+
Sbjct:   64 KTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNF 243          

HSP 2 Score: 72.0182 bits (175), Expect = 1.315e-36
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKAYELSVLCDAEVALIIF++RGKL +F
Sbjct:   18 QVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.231e-36
Identity = 68/176 (38.64%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 657
            F+  S M KTL+ Y + NY +     +A    E++ Q EYLKLK R E LQ +QRN+LGE+LGPL+  ELE LE Q++ SLKQIRS + Q +LD L +L+ KEQ L + NK L+++       +   +   +G          S        +P   QG    H  + + +LQIGY
Sbjct:   57 FSSSSCMYKTLERYRSCNYNSQD---AAAPENEINYQ-EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGG-------GHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          

HSP 2 Score: 70.0922 bits (170), Expect = 2.231e-36
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTFAKRRNGLLKKAYELS+LCDAEVALIIF+ RG+L +F
Sbjct:   18 QVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.231e-36
Identity = 68/176 (38.64%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 657
            F+  S M KTL+ Y + NY +     +A    E++ Q EYLKLK R E LQ +QRN+LGE+LGPL+  ELE LE Q++ SLKQIRS + Q +LD L +L+ KEQ L + NK L+++       +   +   +G          S        +P   QG    H  + + +LQIGY
Sbjct:   57 FSSSSCMYKTLERYRSCNYNSQD---AAAPENEINYQ-EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGG-------GHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          

HSP 2 Score: 70.0922 bits (170), Expect = 2.231e-36
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTFAKRRNGLLKKAYELS+LCDAEVALIIF+ RG+L +F
Sbjct:   18 QVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.421e-35
Identity = 55/116 (47.41%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            F+  S MLKTL+ Y    Y +        + ++ + Q EY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++
Sbjct:   57 FSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQ-EYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRK 171          

HSP 2 Score: 68.1662 bits (165), Expect = 1.421e-35
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTFAKRRNGLLKKAYELS+LCDAEVAL++F++ G+L +F
Sbjct:   18 QVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.326e-35
Identity = 66/170 (38.82%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  154 KTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVN--TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 657
            KTL+ Y +  Y A   N +  E    S   E  KLKA++EALQR+QR+LLGE+LGPL+  EL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +              +EG   N   +Q    A+        A  Q      A++ EPTLQIGY
Sbjct:   64 KTLERYQHCCYNAQDSNNALSETQ--SWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLE------------VEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGY 219          

HSP 2 Score: 72.0182 bits (175), Expect = 5.326e-35
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKAYELSVLCDAEVALIIF++RGKL +F
Sbjct:   18 QVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57          
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MADS8_ORYSJ1.454e-4845.74MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA1.394e-4240.40MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ7.393e-4141.81MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI7.393e-4141.81MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL3_ARATH9.612e-4136.73Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD17_ORYSJ1.315e-3635.42MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS1_ORYSJ2.231e-3638.64MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI2.231e-3638.64MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD34_ORYSJ1.421e-3547.41MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MADS6_ORYSJ5.326e-3538.82MADS-box transcription factor 6 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
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