CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.129e-32
Identity = 60/170 (35.29%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  157 TLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQ 660
            T++ Y N  Y     N    E  +   Q E  KLK++YE+L R+ RNLLGE+LG +   EL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +  T  HA F   Q +      ++  +P+  +  + ++P+ P      + L+C  EP LQIG+Q
Sbjct:   65 TIERY-NRCYNCSLSNNKPEETTQSWCQ-EVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHA-FKTFQDLWANSAASVAGDPNNSE--FPVEPSHP------NVLDCNTEPFLQIGFQ 223          

HSP 2 Score: 72.0182 bits (175), Expect = 5.129e-32
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKAYELSVLCDAEVALIIF++RGKL +F
Sbjct:   18 QVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.069e-30
Identity = 66/191 (34.55%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 693
            +A  S M K L+ Y   +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN  EL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++             +L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:   57 YATDSCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK-------------ELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          

HSP 2 Score: 64.6994 bits (156), Expect = 2.069e-30
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA E+SVLCDAEVALIIF+ +GKL K+
Sbjct:   18 QVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.503e-30
Identity = 55/146 (37.67%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAE 567
            +A  SRM K L+ Y   +Y A +  +SA    E +   EY KLKA+ E +Q+  ++L+GE+L  LN  EL+ LE+QL++SLK I S ++  ML++++ELQ KE+ L E NK L Q+ +  R  +  G Q +  +    +Q    A+
Sbjct:   57 YATDSRMDKILERYERYSY-AEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKAL-QKELVERQKNVRGQQQVGQWDQTQVQAQAQAQ 200          

HSP 2 Score: 63.5438 bits (153), Expect = 3.503e-30
Identity = 29/40 (72.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+E+SVLCDAEVA I+F+ +GKL ++
Sbjct:   18 QVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.949e-30
Identity = 66/191 (34.55%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 693
            +A  S M K L+ Y   +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN  EL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++             +L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:   57 YATDSCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK-------------ELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          

HSP 2 Score: 63.1586 bits (152), Expect = 5.949e-30
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA E+SVLCDAEVALIIF+ +GKL ++
Sbjct:   18 QVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.772e-29
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLR 492
            ++  S M K L+ Y   +Y A +  ++    +  +   EY +LKA+ E L+R+QR+ LGE+L  ++S EL++LE+QLDT+LK IRS + Q M D++ ELQ KE+ + E N    K +K+R   LR
Sbjct:   57 YSTDSCMEKILERYERYSY-AERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILR 180          

HSP 2 Score: 62.7734 bits (151), Expect = 3.772e-29
Identity = 28/40 (70.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GLLKKA+E+SVLCDAEVAL++F+++GKL ++
Sbjct:   18 QVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 1.411e-28
Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYG-----APQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH------ALECEPTLQIG--YQPAD 669
            ++  S M K L+ Y   +Y      AP  +V+A+    +    EY +LKA+ E L+R+QR+ LGEEL P++  +L++LE+QL+T+LK IRS + Q M ++L  LQ KE+ + E N    K +K+R   LR             Q    QLN S +D         PQ   F H      A +  P L +G  YQ  D
Sbjct:   57 YSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSM----EYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTK-----------QTQCEQLNRSVDDV--------PQPQPFQHPHLYMIAHQTSPFLNMGGLYQEED 230          

HSP 2 Score: 61.6178 bits (148), Expect = 1.411e-28
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GLLKKA E+SVLCDAEV+LI+F+++GKL ++
Sbjct:   18 QVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.869e-28
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLR 492
            ++  S M K L+ Y   +Y A +  ++    +  +   EY +LKA+ E L+R+QR+ LGE+L  ++  EL++LE+QLDT+LK IR+ + Q M +++ ELQ KE+ + E N    K +K+R   LR
Sbjct:   57 YSTDSCMEKILERYERYSY-AERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILR 180          

HSP 2 Score: 62.7734 bits (151), Expect = 6.869e-28
Identity = 28/40 (70.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GLLKKA+E+SVLCDAEVAL++F+++GKL ++
Sbjct:   18 QVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.120e-26
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNY---GAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 474
            F+  S M   L+ Y   ++      +PN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L   EL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++
Sbjct:   57 FSSHSSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170          

HSP 2 Score: 66.2402 bits (160), Expect = 2.120e-26
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+E+SVLCDA+VALI+F+ +GKL +F
Sbjct:   18 QVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.120e-26
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNY---GAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 474
            F+  S M   L+ Y   ++      +PN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L   EL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++
Sbjct:   57 FSSHSSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170          

HSP 2 Score: 66.2402 bits (160), Expect = 2.120e-26
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+E+SVLCDA+VALI+F+ +GKL +F
Sbjct:   18 QVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEF 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.676e-26
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  235 IQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ 516
            +++E  KLK +YE+L R+ RNL+GE+L  ++  EL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  LK  T      DF G Q
Sbjct:   88 LRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLET---EDHDFKGFQ 178          

HSP 2 Score: 64.6994 bits (156), Expect = 4.676e-26
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KR++GLLKKAYELSVLCDAEV+LIIF+  GKL +F
Sbjct:   18 QVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF 57          
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AGL6_ARATH5.129e-3235.29Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD14_ORYSI2.069e-3034.55MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD15_ORYSJ3.503e-3037.67MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD14_ORYSJ5.949e-3034.55MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AP1_SINAL3.772e-2940.00Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
CAL_ARATH1.411e-2834.52Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AP1_ARATH6.869e-2837.60Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD18_ORYSJ2.120e-2638.14MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.120e-2638.14MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL13_ARATH4.676e-2641.49Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
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