CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.924e-26
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  145 RMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            R+L+  D Y   +      +VS  E   L    E+ KLKAR E L++++RN +GE+L  L+  EL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L ++
Sbjct:   65 RILERYDRYLYSDKQLVGRDVSQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKK 171          

HSP 2 Score: 64.3142 bits (155), Expect = 7.924e-26
Identity = 29/40 (72.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA+E+SVLCDAEVALI+F+++GKL ++
Sbjct:   18 QVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.936e-26
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            +A  S M + L+ Y   ++   Q  V       +S   E+ KLKAR E LQR+Q++ +GE+L  L+  EL++LE QLD++LK IRS + Q M ++++ LQ K++ L E N  L ++
Sbjct:   57 YANDSCMERILERYERYSFAEKQL-VPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKK 171          

HSP 2 Score: 62.3882 bits (150), Expect = 7.936e-26
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA+E+SVLCDAEV LI+F+ +GKL ++
Sbjct:   18 QVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.746e-25
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            +A  S M + L+ Y   ++ A +  V        S   E+ KLKAR E LQR+Q++ +GE+L  LN  EL++LE QLD++LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:   57 YANDSCMERLLERYERYSF-AERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          

HSP 2 Score: 62.3882 bits (150), Expect = 1.746e-25
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA+E+SVLCDAEV LI+F+ +GKL ++
Sbjct:   18 QVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.960e-25
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  244 EYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLRHADFAGLQ 516
            E+ KLKAR E L++++RN +GE+L  L+  EL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N    K +K+R     H +   +Q
Sbjct:   94 EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQ 188          

HSP 2 Score: 64.3142 bits (155), Expect = 2.960e-25
Identity = 29/40 (72.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA+E+SVLCDAEVAL+IF+++GKL ++
Sbjct:   18 QVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.606e-23
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            +A  S M + L+ Y   ++   Q  V        S   E  KLKAR E LQR+++  +GE+L  LN  EL++LE QL ++LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:   57 YATDSCMERLLERYERYSFAEKQL-VPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          

HSP 2 Score: 62.3882 bits (150), Expect = 2.606e-23
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA+E+SVLCDAEV LI+F+ +GKL ++
Sbjct:   18 QVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.386e-23
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYEL++LCDAE+ALI+F++RG+L +F
Sbjct:   18 QVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEF 57          

HSP 2 Score: 59.6918 bits (143), Expect = 3.386e-23
Identity = 42/154 (27.27%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPT---LQIGYQPADPISVVTA 690
            Q+E  K++ + + LQ + R+L+GE +G + + EL+SLE +L+  + +IRS + + +   +  +Q +E  L   N  L+ +      A+    Q              +AED      PA   G +    LE  P     +  YQPA P+S++ A
Sbjct:   93 QQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQ--------------AAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQPAPPVSMLAA 232          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.735e-22
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+ELSVLCDAEV+LIIF+ +GKL +F
Sbjct:   18 QVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF 57          

HSP 2 Score: 56.9954 bits (136), Expect = 4.735e-22
Identity = 36/115 (31.30%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  142 SRMLKTLDXYHNGNYGAPQPNVSAREALELSIQK---EYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            S M  T+D Y        +  VS +   E ++Q    E   +  + E L+ S+R LLGE +G  +  EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++
Sbjct:   60 SNMQDTIDRYLRHT----KDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.041e-21
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F+ RG+L ++
Sbjct:   18 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY 57          

HSP 2 Score: 54.299 bits (129), Expect = 1.041e-21
Identity = 28/104 (26.92%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQ 549
            Q+E  KL+ + + +Q S RNL+G+ L  L+  EL+ +E +L+ ++ +IRS + + +L  +   Q +E  L   N  L+ +   +        Q++ G ++N ++
Sbjct:   91 QQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIE 194          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.758e-21
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVAL+IF+ RG+L ++
Sbjct:   33 QVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY 72          

HSP 2 Score: 53.5286 bits (127), Expect = 1.758e-21
Identity = 32/107 (29.91%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  157 TLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            T++ Y      A  P  S  EA     Q+E  KL+ +   +Q S R+++GE LG LN  EL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:   80 TIERYKKACSDAVNPP-SVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 185          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.289e-21
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F+ RG+L ++
Sbjct:   34 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY 73          

HSP 2 Score: 53.1434 bits (126), Expect = 2.289e-21
Identity = 31/107 (28.97%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  157 TLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            T++ Y      +P  + S  EA     Q+E  KL+    ++Q++ RN++GE LG L   +L+ LE +L+  + +IRS + + +   +  +Q KE  L   N+ L+ +
Sbjct:   81 TIERYKKACTDSPNTS-SVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAK 186          
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AGL8_ARATH7.924e-2637.84Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLLC7.936e-2637.93Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLTU1.746e-2537.93Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL2.960e-2538.95Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLCO2.606e-2336.21Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ3.386e-2375.00MADS-box transcription factor 21 OS=Oryza sativa s... [more]
SOC1_ARATH4.735e-2280.00MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL11_ARATH1.041e-2180.00Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL1_ARATH1.758e-2180.00Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_PANGI2.289e-2180.00Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
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