CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.291e-21
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+ELSVLCDAEVALI+F+ RG+L +F
Sbjct:   18 QVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEF 57          

HSP 2 Score: 53.9138 bits (128), Expect = 2.291e-21
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 498
            FA    + KT+D Y    Y     N    +     ++ + L L  + EAL  S+R +LGE L   +  EL  LE +L+ SL +IR  +T+ +   + +L+ KE+ L + N+ L+ +   L  A
Sbjct:   57 FASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAA 177          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.871e-21
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F++RG+L ++
Sbjct:   34 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73          

HSP 2 Score: 51.9878 bits (123), Expect = 3.871e-21
Identity = 38/135 (28.15%), Postives = 62/135 (45.93%), Query Frame = 1
Query:  208 SAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDT 612
            S  EA     Q+E  KL+A+   LQ   RN+LGE L  L+  +L++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ +      A           Q    Q+N       Y L P   Q DT
Sbjct:   97 SISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQ---------QQQQQQQMNLMPGSSSYELVPPPHQFDT 222          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.552e-21
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVAL++F+NRG+L ++
Sbjct:   34 QVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY 73          

HSP 2 Score: 49.6766 bits (117), Expect = 6.552e-21
Identity = 35/135 (25.93%), Postives = 62/135 (45.93%), Query Frame = 1
Query:  208 SAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDT 612
            S  EA     Q+E  KL+A+   L    RN++GE L  +   EL++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ +      A          +Q   + L P +    + L P   Q DT
Sbjct:   97 SVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQ---------HQHQQMNLMPGSSSNYHELVPPPQQFDT 222          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.563e-21
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+ELSVLCDAEVALI+F+ RG+L +F
Sbjct:   18 QVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEF 57          

HSP 2 Score: 52.373 bits (124), Expect = 6.563e-21
Identity = 37/123 (30.08%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  130 FAXRSRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 498
            FA    + KT+D Y    Y     N    +     ++ + L L  + EAL  S+R +LGE L   +  EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L + N+ L+ +   L  A
Sbjct:   57 FASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAA 177          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.520e-21
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F++RG+L ++
Sbjct:   34 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73          

HSP 2 Score: 50.8322 bits (120), Expect = 8.520e-21
Identity = 26/80 (32.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            Q+E  KL+ +  ++Q S R L+GE +G ++  EL +LE +LD S+ +IRS + + +   +  +Q +E  L   N+ L+ +
Sbjct:  107 QQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAK 186          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.442e-20
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F++RG+L ++
Sbjct:   34 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73          

HSP 2 Score: 50.0618 bits (118), Expect = 1.442e-20
Identity = 25/80 (31.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            Q+E  KL+ +  ++Q S R L+GE +G ++  EL +LE +L+ S+ +IRS + + +   +  +Q +E  L   N+ L+ +
Sbjct:  107 QQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAK 186          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.441e-20
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVAL+IF+ RG+L ++
Sbjct:   33 QVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY 72          

HSP 2 Score: 49.6766 bits (117), Expect = 2.441e-20
Identity = 31/107 (28.97%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  157 TLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            T++ Y      A  P  +  EA     Q+E  KL+ +   +Q   R++LGE LG LN  EL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:   80 TIERYKKACSDAVNPP-TITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSK 185          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 5.375e-20
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 492
            Q+E   L+ +   LQ + R L+GE+L  LN  EL+SLE QL+ SL+ +R+ +   ++D + EL  K  L+ + N  L ++   +R
Sbjct:   90 QREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIR 174          

HSP 2 Score: 57.3806 bits (137), Expect = 5.375e-20
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNG+ KKA EL++LCDAEV L+IF++ G+L ++
Sbjct:   18 QVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY 57          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 5.379e-20
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  223 LELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHK 435
            LE S+  +++KL+ R EAL++SQRNL+G+EL  L   +++ LE Q+DTSL  IRS + + +++  T L+ K
Sbjct:   90 LEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160          

HSP 2 Score: 53.9138 bits (128), Expect = 5.379e-20
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKL 122
            QVTF+KRR GLLKKA+E++VLCD +VA I+F+ +G L
Sbjct:   18 QVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNL 54          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.389e-19
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKFCXXIKN 149
            QVTF+KRR GL KKA ELSVLCDA+VALI+F++ GKL+ F     N
Sbjct:   18 QVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMN 63          

HSP 2 Score: 52.7582 bits (125), Expect = 3.389e-19
Identity = 37/124 (29.84%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  142 SRMLKTLDXY--HNGNYG-APQPNVSAREALELSIQ-KEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAD 501
            S M + +D Y  H+ N G A QP+      L+L+++  +Y  L  +        R + GEEL  L+  EL+ LE+ L+  L ++  T+ Q  ++ ++ELQ K   L+E N  L+ +   +  A+
Sbjct:   60 SSMNEIIDKYNTHSNNLGKAEQPS------LDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAE 177          
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MAD56_ORYSJ2.291e-2180.00MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AG_TOBAC3.871e-2180.00Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC6.552e-2180.00Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MAD56_ORYSI6.563e-2180.00MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AG_BRANA8.520e-2180.00Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH1.442e-2080.00Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL5_ARATH2.441e-2080.00Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD27_ORYSJ5.375e-2035.29MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD20_ORYSJ5.379e-2043.66MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD22_ORYSJ3.389e-1965.22MADS-box transcription factor 22 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
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