CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.389e-19
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GL+KKA EL++LCDAEV LIIF++ GKL  F
Sbjct:   18 QVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDF 57          

HSP 2 Score: 55.0694 bits (131), Expect = 3.389e-19
Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNT 543
            Q+E   L+    ALQ + R ++GE+L  L+  EL SLE Q++ SL+ IR  + Q +   + EL  K  L+ + N  L ++   + H +   L   + Y  NT
Sbjct:   90 QREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRI-HQENVEL-YKKAYMANT 189          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.447e-19
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GLLKKA+ELSVLCDAE+ LIIF++ GKL ++
Sbjct:   18 QVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEY 57          

HSP 2 Score: 51.9878 bits (123), Expect = 7.447e-19
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  244 EYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ 516
            E  ++K   E LQ + R ++GE+L  L   EL  L +QL+++  ++RS + Q ML  L  L+ KE++L + N  L  R +  + A   G+Q
Sbjct:   90 EMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHL-CRLLAEQQAAVEGVQ 179          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.129e-18
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKFC 134
            QVTF+KRR GL KKA ELSVLCDA+VALIIF++ GKL +FC
Sbjct:   18 QVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC 58          

HSP 2 Score: 47.3654 bits (111), Expect = 2.129e-18
Identity = 28/100 (28.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  223 LELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR-TMTLRHADFAGLQL 519
            L+L    ++ ++           R + GEEL  L+  EL+ LE+ L+T L ++  T++  ++  ++ELQ K   L + NK L+Q+ T      +  G+Q+
Sbjct:   86 LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQI 185          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.759e-18
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GLLKKA ELSVLCDAEVA+I+F+  GKL ++
Sbjct:   18 QVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY 57          

HSP 2 Score: 50.447 bits (119), Expect = 2.759e-18
Identity = 36/115 (31.30%), Postives = 58/115 (50.43%), Query Frame = 1
Query:  148 MLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 492
            M +TL  Y  GN+ +   + +  +  E+ I K+ L        LQ     L G+ L PL   EL+SLE+QL  +L  +R  + + + + L E + KEQ     N+TL+++   LR
Sbjct:   62 MKQTLSRY--GNHQSSSASKAEEDCAEVDILKDQLS------KLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELR 168          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 2.767e-18
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA ELS+LCDAEV L++F++ G+L +F
Sbjct:   18 QVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF 57          

HSP 2 Score: 48.9062 bits (115), Expect = 2.767e-18
Identity = 33/112 (29.46%), Postives = 54/112 (48.21%), Query Frame = 1
Query:  142 SRMLKTLDXYHNGNYGAPQPNVSAREALELSI-QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 474
            + M   +D Y N    A +  +      E+ I Q+E   L+ +   LQ S + L+GEEL  L   +L+ LE +L+ SL+ IR  +   +   + EL  K  L+ + N  L +
Sbjct:   60 TNMKTVIDRYTN----AKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSR 167          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.735e-17
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GLLKKA+ELSVLCDAEVA+I+F+  GKL +F
Sbjct:   18 QVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF 57          

HSP 2 Score: 46.2098 bits (108), Expect = 1.735e-17
Identity = 34/120 (28.33%), Postives = 58/120 (48.33%), Query Frame = 1
Query:  148 MLKTLDXYHNGNYGAPQPNVSAR-----EALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 492
            M KTL  Y N    +  P ++ +     E  E+ + K+ + +      LQ    ++ G+ L  L+  EL+ LE+QL+ SL  +R  +   +   L E + KEQ     N+TL+++   LR
Sbjct:   62 MKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISM------LQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQELR 175          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.254e-17
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKL 122
            QVTF+KRR GL KKA ELSVLCDA+VALIIF++ GKL
Sbjct:   18 QVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKL 54          

HSP 2 Score: 48.9062 bits (115), Expect = 2.254e-17
Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 1
Query:  223 LELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 489
            L+L     Y +L           R + GEEL  LN  EL+ LER L+T L ++   +   ++  + +LQ K   L E N+ L+Q+ M +
Sbjct:   86 LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEI 174          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 4.997e-17
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNK 128
            QVTF KRR GLLKKA ELSVLCDA+V +IIF+++GKL++
Sbjct:   18 QVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHE 56          

HSP 2 Score: 47.7506 bits (112), Expect = 4.997e-17
Identity = 30/102 (29.41%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  172 HNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            +  N    Q    A +  +++ Q  +L L+   + LQR  R+  G   G +   +L +LE+ L+  + QIR+T+ Q M   +  L++KE +L EAN+ L+++
Sbjct:   70 YQSNVAGGQMEPGALQRQQVAEQGIFL-LREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEK 170          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.848e-16
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR GL+KKA EL++LCDA+V LI+F+  G+L  F
Sbjct:   18 QVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF 57          

HSP 2 Score: 50.0618 bits (118), Expect = 1.848e-16
Identity = 32/120 (26.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGL--QLMEGYQVNTLQLNPSAEDCGYGLKP 591
            Q+E   L+ + + L  + R LLGEE+      +L+ L+ Q++ SL  IR+ + Q + + + +L  K  L+ + N  L+++   + H     L  +L  G   ++ Q+  S++D G    P
Sbjct:   90 QREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKK-FNIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGESSTP 208          
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.439e-16
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRR+GL KKA ELS+LCDAEV L++F++  +L  F
Sbjct:   18 QVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF 57          

HSP 2 Score: 49.2914 bits (116), Expect = 2.439e-16
Identity = 31/98 (31.63%), Postives = 52/98 (53.06%), Query Frame = 1
Query:  142 SRMLKTLDXYHNGNYGAPQPNVSAREALELSIQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHK 435
            S  +K++   +N     P   ++A    +L  Q+E   L+ +   LQ   R LLG++L  L+  +L++LE +L+ SLK IR  +   M+D + EL  K
Sbjct:   59 SSSMKSIIERYNETKEDPHQTMNASSEAKLW-QQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AGL21_ARATH3.389e-1970.00Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
GGM13_GNEGN7.447e-1972.50MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
SVP_ARATH2.129e-1875.61MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
AGL15_ARATH2.759e-1872.50Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD57_ORYSJ2.767e-1870.00MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL15_BRANA1.735e-1775.00Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
JOIN_SOLLC2.254e-1778.38MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MAD33_ORYSJ4.997e-1771.79MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD25_ORYSJ1.848e-1662.50MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD23_ORYSJ2.439e-1662.50MADS-box transcription factor 23 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
back to top