CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.075e-14
Identity = 38/134 (28.36%), Postives = 67/134 (50.00%), Query Frame = 1 
Query:  244 EYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANK------------TLKQRTMTLRHADFAGLQLMEGYQV---NTLQLNPSAEDCGYGLKPAQP 600
            E  ++K   + LQ + R+  GE+L  L   E+  LE+QL+ S+ ++RS + Q +   L  L+ KE +L E N+            +++Q+ +     D  G+   + +Q    + LQL+P      + L+PAQP
Sbjct:   65 EITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLSPQLHP--FRLQPAQP 196

HSP 2 Score: 42.3578 bits (98), Expect = 2.075e-14
Identity = 18/31 (58.06%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:   39 GLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            GLLKKA EL++LCDA++ +IIF++ GK+ +F
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEF 32
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.668e-14
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKL 122
            QVTF KRR GLLKKA ELS+LC+A++ +IIF+  GKL
Sbjct:   18 QVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKL 54

HSP 2 Score: 41.9726 bits (97), Expect = 7.668e-14
Identity = 25/81 (30.86%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGP-LNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            ++E + LK     LQ+  R + G      +   EL +LER L+  +  IRS + Q M+  +  L+ KE +L  AN+ L+++
Sbjct:   89 KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEK 169
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 7.668e-14
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKL 122
            QVTF KRR GLLKKA ELS+LC+A++ +IIF+  GKL
Sbjct:   18 QVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKL 54

HSP 2 Score: 41.9726 bits (97), Expect = 7.668e-14
Identity = 25/81 (30.86%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:  238 QKEYLKLKARYEALQRSQRNLLGEELGP-LNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 477
            ++E + LK     LQ+  R + G      +   EL +LER L+  +  IRS + Q M+  +  L+ KE +L  AN+ L+++
Sbjct:   89 KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEK 169
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.947e-14
Identity = 25/40 (62.50%), Postives = 36/40 (90.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVT++KRRNGL KKA EL+VLCDA+V++I+ ++ GKL++F
Sbjct:   18 QVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEF 57

HSP 2 Score: 39.2762 bits (90), Expect = 9.947e-14
Identity = 29/98 (29.59%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  235 IQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEG 528
            +Q++  KLK     L++  R  +GE L  LN  +LE L   +D SLK IR  + + + + +   + K + + E ++ L       R  D  GL   EG
Sbjct:   87 MQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLE-FDARQEDPYGLVEQEG 183
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 2.194e-13
Identity = 21/39 (53.85%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNK 128
            QVTF+KRRNGL++KA +LS+LC++ +A+++ +  GKL K
Sbjct:   18 QVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYK 56

HSP 2 Score: 43.5134 bits (101), Expect = 2.194e-13
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  217 EALELSIQ-KEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 468
            EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+T+L   R+ +T+ M+  +  LQ  E LL E N+TL
Sbjct:   79 EALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTL 160
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+ELSVLCDAEVALIIF+ RGKL +F
Sbjct:   18 QVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF 57
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F++RG+L ++
Sbjct:   18 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 57
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF+KRRNGLLKKA+ELSVLCDAEVALI+F+ RGKL +F
Sbjct:   18 QVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F++RG+L ++
Sbjct:   18 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 57
[Close]
BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVTF KRRNGLLKKAYELSVLCDAEVALI+F++RG+L ++
Sbjct:   34 QVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AP32_ASAEU2.075e-1428.36MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD26_ORYSJ7.668e-1467.57MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI7.668e-1467.57MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MADS1_PETHY9.947e-1462.50Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AGL31_ARATH2.194e-1353.85Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
AGL14_ARATH2.278e-1185.00Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MADS3_ORYSJ2.976e-1180.00MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD50_ORYSJ2.976e-1182.50MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD13_ORYSJ2.976e-1180.00MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AG_PETHY2.976e-1180.00Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
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