CB611080

Overview
NameCB611080
Unique NameCB611080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB611080 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 4.061e-11
Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 3 
Query:   12 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFANRGKLNKF 131
            QVT++KRRNGL KKA+ELSVLCDA+V++I+ ++  KL+++
Sbjct:   18 QVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEY 57

HSP 2 Score: 31.9574 bits (71), Expect = 4.061e-11
Identity = 25/98 (25.51%), Postives = 43/98 (43.88%), Query Frame = 1 
Query:  235 IQKEYLKLKARYEALQRSQRNLLGEELGPLNS*ELESLERQLDTSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEG 528
            +Q+   KL      L+R  R  +GE L  L   ++ +L   +D SLK IR  + + + + +   + K + + E ++ L       R     GL   EG
Sbjct:   87 MQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEG 184
The following BLAST results are available for this feature:
BLAST of CB611080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
DEFA_ANTMA4.061e-1160.00Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611080 ID=CB611080; Name=CB611080; organism=Citrus sinensis; type=EST; length=711bp
GAGATCGCGGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAG
AAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCAT
TTTCGCCAATAGAGGAAAGTTGAACAAATTTTGCAGNNAGATCAAGAATG
CTCAAAACGCTTGATANNTACCATAATGGCAACTATGGAGCACCACAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTATCCAGAAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCTAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATACGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGA
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTC
TGAATAATTAC
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